Ligand clusters for UniProt code Q00960

Ligand clusters for Q00960: Glutamate receptor ionotropic, NMDA 2B from Rattus norvegicus

		Top 6 (of 12) ligand clusters Cluster 1. 9 ligand types 10 ligands Cluster 2. 4 ligand types 12 ligands Cluster 3. 2 ligand types 19 ligands Cluster 4. 2 ligand types 7 ligands Cluster 5. 1 ligand type 14 ligands Cluster 6. 1 ligand type 3 ligands
Representative protein: 6whsB

Structures

PDB		Schematic diagram
6whsB
6whwB
6whvB
6whuB
6whxB
		more ...

Cluster 1 contains 9 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: QEL × 2 ifenprodil 4-[(1r,2s)-2-(4-Benzylpiperidin-1-Yl)-1- Hydroxypropyl]phenol PDB codes: 3qel(B), 4pe5(B).
		2. Ligand: HX7 × 1 N-{4-[(2s)-3-{Butyl[2-(3,4-Dichlorophenyl)ethyl]amino}- 2-Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7u(B).
		3. Ligand: HXM × 1 N-{4-[(2s)-3-{[2-(3,4-Dichlorophenyl)ethyl](propan-2- Yl)amino}-2- Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7w(B).
		4. Ligand: HYS × 1 N-{4-[(2s)-3-{[2-(3,4-Dichlorophenyl)ethyl]amino}-2- Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7r(B).
		5. Ligand: HYY × 1 N-{4-[(2s)-3-{[2-(3,4-Dichlorophenyl)ethyl](propyl) amino}-2- Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7t(B).
		6. Ligand: HZ4 × 1 N-{4-[(2s)-3-{[2-(3,4-Dichlorophenyl)ethyl](ethyl) amino}-2- Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7s(B).
		7. Ligand: QEM × 1 4-[(1r,2s)-3-(4-Benzylpiperidin-1-Yl)-1-Hydroxy-2- Methylpropyl]phenol PDB code: 3qem(B).
		8. Ligand: T88 × 1 N-{4-[(2r)-3-{Butyl[2-(3,4-Dichlorophenyl)ethyl]amino}- 2-Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7v(B).
		9. Ligand: T97 × 1 N-{4-[(2s)-3-{[2-(3,4-Dichlorophenyl)ethyl](2- Methylpropyl)amino}-2- Hydroxypropoxy]phenyl}methanesulfonamide PDB code: 6e7x(B).

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG-NAG × 6 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 6cna(B), 6whr(B), 6whs(B), 6why(B), 6wi0(B), 6wi1(B).
		2. Ligand: QGP × 4 (2s)-2-Amino-3-[2',4'-Dichloro-4-Hydroxy-5- (Phosphonomethyl)biphenyl-3-Yl]propanoic acid PDB codes: 6whu(B), 6whv(B), 6whw(B), 6whx(B).
		3. Ligand: GLU × 1 PDB code: 4pe5(B).
		4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 4pe5(B).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 17 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3jpw(A), 3jpy(A), 3qel(B), 3qem(B), 4pe5(B), 5tpz(D), 6cna(B), 6e7r(B), 6e7s(B), 6e7t(B), 6e7u(B), 6e7w(B), 6e7x(B), 6whr(B), 6whs(B), 6wi0(B), 6wi1(B).
		2. Ligand: NAG-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 6whv(B), 6wi1(B).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 6 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 6whr(B), 6wht(B), 6whv(B), 6whw(B), 6why(B), 6wi0(B).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 6whu(B).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 14 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3jpw(A), 3jpy(A), 3qel(B), 3qem(B), 4pe5(B), 6cna(B), 6e7r(B), 6e7s(B), 6e7t(B), 6e7u(B), 6e7v(B), 6e7w(B), 6e7x(B), 6whu(B).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 6whr(B), 6whs(B), 6wi1(B).