Ligand clusters for UniProt code P43133

Ligand clusters for P43133: Thermolysin from Geobacillus stearothermophilus

		Top 6 (of 12) ligand clusters Cluster 1. 14 ligand types 32 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 3 ligands Cluster 6. 1 ligand type 3 ligands
Representative protein: 5dlhA

Structures

PDB		Schematic diagram
5dlhA
6ymrE
5wr6A
6y4iE
6ghxA
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 11 PDB codes: 5dlh(A), 5wr2(A), 5wr3(A), 5wr4(A), 5wr5(A), 5wr6(A), 6fsm(A), 6y4i(E), 6yi6(E), 6ymr(E), 6yms(E).
		2. Ligand: GOL × 3 glycerin Glycerol PDB codes: 6fsm(A), 6yms(E).
		3. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 6yms(E).
		4. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 6yms(E).
		5. Ligand: NX6 × 4 N-[(Benzyloxy)carbonyl]-L-Aspartic acid PDB codes: 5wr2(A), 5wr3(A), 5wr5(A), 5wr6(A).
_Cd		6. Metal: _CD × 3 PDB codes: 5onp(A), 5onq(A), 6ghx(A).
		7. Ligand: GLY-ALA-ILE-ILE-GLY × 2 PDB codes: 5onp(A), 5onq(A).
		8. Ligand: 0PK × 1 N-[(S)-[(1r)-1-{[(Benzyloxy)carbonyl]amino}-2- Phenylethyl](hydroxy)phosphoryl]-L-Leucyl-L-Alanine PDB code: 6y4i(E).
		9. Ligand: ILE-ILE × 1 PDB code: 6ghx(A).
		10. Ligand: ORK × 1 (2~{s})-2-[[(2~{s})-4-Methyl-2-[[Oxidanyl-[(1~{s})-2- Phenyl-1- (Phenylmethoxycarbonylamino) ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid PDB code: 6yi6(E).
		11. Ligand: OZE × 1 (((R)-1-(((Benzyloxy)carbonyl)amino)-2-Phenylethyl) oxidophosphoryl)glycyl-L-Leucinate PDB code: 6ymr(E).
		12. Ligand: OZH × 1 (2~{s})-4-Methyl-2-[2-[[Oxidanyl-[(1~{s})-2-Phenyl-1- (Phenylmethoxycarbonylamino) ethyl]phosphoryl]amino]ethanoylamino]pentanoic acid PDB code: 6yms(E).
		13. Ligand: PO4 × 1 Phosphate ion PDB code: 6fsm(A).
		14. Ligand: VAL-LYS × 1 PDB code: 6fsm(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5wr5(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5wr5(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6fsm(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5onp(A), 5onq(A), 6ymr(E).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 6y4i(E), 6yi6(E), 6yms(E).