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EBI
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PDBsum
Ligand clusters for UniProt code P40394
Ligand clusters for P40394: All-trans-retinol dehydrogenase [NAD(+)] ADH7 from Homo sapiens
Top 6 (of 7) ligand clusters
Cluster 1.
3 ligand types
15 ligands
Cluster 2.
1 ligand type
3 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
2 ligand types
5 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1agnA
Structures
PDB
Schematic diagram
1agn
A
1d1t
A
1d1s
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAD × 3
Nicotinamide-Adenine-Dinucleotide
PDB codes:
1agn
(A),
1d1s
(A),
1d1t
(A).
_Zn
2. Metal:
_ZN × 6
PDB codes:
1agn
(A),
1d1s
(A),
1d1t
(A),
3. Ligand:
ACT × 6
Acetate ion
PDB codes:
1agn
(A),
1d1s
(A),
1d1t
(A),
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAD × 3
Nicotinamide-Adenine-Dinucleotide
PDB codes:
1agn
(A),
1d1s
(A),
1d1t
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 2
PDB codes:
1d1s
(A),
1d1t
(A).
2. Ligand:
ACT × 1
Acetate ion
PDB code:
1agn
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 2
PDB codes:
1d1s
(A),
1d1t
(A).
2. Ligand:
ACT × 3
Acetate ion
PDB codes:
1d1s
(A),
1d1t
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
CAC × 2
Cacodylate ion
PDB codes:
1d1s
(A),
1d1t
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
CAC × 2
Cacodylate ion
PDB codes:
1d1s
(A),
1d1t
(A).