Ligand clusters for UniProt code P35961

Ligand clusters for P35961: Envelope glycoprotein gp160 from Human immunodeficiency virus type 1 group M subtype B (isolate YU-2)

		Top 6 (of 24) ligand clusters Cluster 1. 4 ligand types 67 ligands Cluster 2. 3 ligand types 40 ligands Cluster 3. 2 ligand types 26 ligands Cluster 4. 3 ligand types 21 ligands Cluster 5. 2 ligand types 20 ligands Cluster 6. 3 ligand types 4 ligands
Representative protein: 4r4fA

Structures

PDB		Schematic diagram
4r4fA
3tgqA
4jzwA
4jzzA
4k0aA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAG × 62 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1g9n(G), 1rzk(G), 1yyl(G), 1yym(G), 2i5y(G), 2i60(G), 2qad(A), 3hi1(G), 3tgq(A), 4dvr(G), 4jzw(A), 4jzz(A), 4k0a(A), 4ka2(A), 4laj(J), 4r4f(A), 4rqs(G), 4rwy(A), 5a7x(A), 5a8h(A),
		2. Ligand: IPA × 2 isopropyl alcohol Isopropyl alcohol PDB codes: 4jzw(A), 4jzz(A).
		3. Ligand: NAG-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 4rqs(G),
		4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 4rqs(G).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 37 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1g9n(G), 1rzk(G), 1yyl(G), 1yym(G), 2i5y(G), 2i60(G), 2qad(A), 3hi1(G), 3tgq(A), 4dvr(G), 4jzw(A), 4jzz(A), 4k0a(A), 4ka2(A), 4laj(J), 4r4f(A), 4rwy(A), 5a7x(A), 5a8h(A),
		2. Ligand: NAG-NAG-BMA × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 4rqs(G),
		3. Ligand: BU3 × 1 (R,R)-2,3-Butanediol PDB code: 4r4f(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 25 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1g9n(G), 1rzk(G), 1yyl(G), 1yym(G), 2i5y(G), 2i60(G), 2qad(A), 3hi1(G), 3tgq(A), 4jzw(A), 4jzz(A), 4k0a(A), 4ka2(A), 4laj(J), 5a7x(A), 5a8h(A),
		2. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 4rqs(G).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 19 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1g9n(G), 1rzk(G), 1yyl(G), 1yym(G), 2i5y(G), 2i60(G), 2qad(A), 3hi1(G), 3tgq(A), 4dvr(G), 4jzw(A), 4jzz(A), 4k0a(A), 4ka2(A), 4laj(J), 4r4f(A), 4rwy(A), 5a7x(A), 5a8h(A).
		2. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 4jzz(A).
		3. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4rqs(G).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 19 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1g9n(G), 1rzk(G), 1yyl(G), 1yym(G), 2i5y(G), 2i60(G), 2qad(A), 3hi1(G), 3tgq(A), 4dvr(G), 4jzw(A), 4jzz(A), 4k0a(A), 4ka2(A), 4laj(J), 4r4f(A), 4rwy(A), 5a7x(A), 5a8h(A).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4rqs(G).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: FLC × 2 Citrate anion PDB codes: 4jzz(A), 4k0a(A).
		2. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 4rwy(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 4jzw(A).