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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P21549
Ligand clusters for P21549: Serine--pyruvate aminotransferase from Homo sapiens
Top 6 (of 22) ligand clusters
Cluster 1.
8 ligand types
19 ligands
Cluster 2.
3 ligand types
6 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
2 ligand types
3 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1j04A
Structures
PDB
Schematic diagram
1j04
A
5f9s
A
5hhy
A
5luc
A
4i8a
A
more ...
Cluster 1 contains 8 ligand types
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Ligand
Description
1. Ligand:
PLP × 9
pyridoxal phosphate
Pyridoxal-5'-Phosphate
PDB codes:
1h0c
(A),
2yob
(A),
4cbr
(A),
4cbs
(A),
5f9s
(A),
5luc
(A),
5ofy
(A),
5og0
(A),
6rv1
(A).
2. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
4cbr
(A),
4i8a
(A).
3. Ligand:
AOA × 2
(Aminooxy)acetic acid
PDB codes:
1h0c
(A),
1j04
(A).
4. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4kxk
(A),
4kyo
(A).
5. Ligand:
BME × 1
Beta-Mercaptoethanol
PDB code:
4kxk
(A).
6. Ligand:
DIO × 1
1,4-Diethylene dioxide
PDB code:
5ofy
(A).
7. Ligand:
PLR × 1
(5-Hydroxy-4,6-Dimethylpyridin-3-Yl)methyl dihydrogen phosphate
PDB code:
5hhy
(A).
8. Ligand:
PMP × 1
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB code:
6rv0
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
PLP × 3
pyridoxal phosphate
Pyridoxal-5'-Phosphate
PDB codes:
2yob
(A),
5f9s
(A),
5luc
(A).
2. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4kxk
(A),
4kyo
(A).
3. Ligand:
PLR × 1
(5-Hydroxy-4,6-Dimethylpyridin-3-Yl)methyl dihydrogen phosphate
PDB code:
5hhy
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
BTB × 3
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2- Hydroxymethyl-Propane-1,3-Diol
PDB codes:
2yob
(A),
4kyo
(A),
5luc
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1h0c
(A),
2yob
(A).
2. Ligand:
BME × 1
Beta-Mercaptoethanol
PDB code:
4kyo
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1h0c
(A),
1j04
(A).
2. Ligand:
BME × 1
Beta-Mercaptoethanol
PDB code:
4kyo
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1h0c
(A),
1j04
(A).