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EBI
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PDBsum
Ligand clusters for UniProt code P09622
Ligand clusters for P09622: Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD PE=1 SV=2
Top 6 (of 13) ligand clusters
Cluster 1.
5 ligand types
19 ligands
Cluster 2.
1 ligand type
13 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
11 ligands
Cluster 6.
2 ligand types
11 ligands
Representative protein: 5j5zA
Structures
PDB
Schematic diagram
5j5z
A
6i4p
A
6i4r
A
6i4q
A
6hg8
A
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code:
1zmc
(A).
2. Ligand:
FAD × 13
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
1zmc
(A),
1zmd
(A),
1zy8
(A),
2f5z
(A),
3rnm
(A),
5j5z
(A),
6hg8
(A),
6i4p
(A),
6i4q
(A),
6i4r
(A),
6i4s
(A),
6i4t
(A),
6i4u
(A).
3. Ligand:
NAI × 1
nadh
1,4-Dihydronicotinamide adenine dinucleotide
PDB code:
1zmd
(A).
4. Ligand:
BTB × 3
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol
PDB codes:
6i4p
(A),
6i4q
(A),
6i4r
(A).
5. Ligand:
BME × 1
Beta-Mercaptoethanol
PDB code:
3rnm
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
FAD × 13
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
1zmc
(A),
1zmd
(A),
1zy8
(A),
2f5z
(A),
3rnm
(A),
5j5z
(A),
6hg8
(A),
6i4p
(A),
6i4q
(A),
6i4r
(A),
6i4s
(A),
6i4t
(A),
6i4u
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5j5z
(A).
2. Ligand:
1PE × 2
Pentaethylene glycol
PDB codes:
6i4t
(A),
6i4u
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
NHE × 1
2-[N-Cyclohexylamino]ethane sulfonic acid
PDB code:
3rnm
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5j5z
(A).
2. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
1zmc
(A),
1zmd
(A),
2f5z
(A),
6hg8
(A),
6i4p
(A),
6i4q
(A),
6i4r
(A),
6i4s
(A),
6i4t
(A),
6i4u
(A).
Cluster 6 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
1zmc
(A),
1zmd
(A),
2f5z
(A),
6hg8
(A),
6i4p
(A),
6i4q
(A),
6i4r
(A),
6i4s
(A),
6i4t
(A),
6i4u
(A).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
5j5z
(A).