Ligand clusters for UniProt code P07143

Ligand clusters for P07143: Cytochrome c1, heme protein, mitochondrial from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

		4 ligand clusters Cluster 1. 4 ligand types 10 ligands Cluster 2. 6 ligand types 15 ligands Cluster 3. 2 ligand types 13 ligands Cluster 4. 1 ligand type 1 ligand
Representative protein: 3cx5D

Structures

PDB		Schematic diagram
3cx5D
2ibzD
1ezvD
1kb9D
6t0bD
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: PC1 × 1 1,2-Diacyl-Sn-Glycero-3-Phosphocholine PDB code: 1p84(D).
		2. Ligand: CDL × 7 Cardiolipin PDB codes: 1kb9(D), 1p84(D), 6hu9(D), 6t0b(D), 6t15(D).
		3. Ligand: CN3 × 1 (2r,5s,11r,14r)-5,8,11-Trihydroxy-2-(Nonanoyloxy)-5,11- Dioxido-16-Oxo-14-[(Propanoyloxy)methyl]- 4,6,10,12,15- Pentaoxa-5,11-Diphosphanonadec-1-Yl undecanoate PDB code: 3cx5(D).
		4. Ligand: CN6 × 1 (2r,5r,11s,14r)-2-(Butanoyloxy)-5,8,11-Trihydroxy-5,11- Dioxido-16-Oxo-14-[(Propanoyloxy)methyl]- 4,6,10,12,15- Pentaoxa-5,11-Diphosphanonadec-1-Yl undecanoate PDB code: 3cxh(D).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: PIE × 1 1,2-Diacyl-Sn-Glycero-3-Phosphoinositol PDB code: 1kb9(D).
		2. Ligand: 3PH × 1 1,2-Diacyl-Glycerol-3-Sn-Phosphate PDB code: 1p84(D).
		3. Ligand: PEF × 6 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6hu9(D), 6t0b(D), 6t15(D),
		4. Ligand: 7PH × 4 (1r)-2-(Dodecanoyloxy)-1-[(Phosphonooxy)methyl]ethyl tetradecanoate PDB codes: 3cx5(D), 3cxh(D), 6giq(D), 6ymx(D).
		5. Ligand: 3PH × 1 1,2-Diacyl-Glycerol-3-Sn-Phosphate PDB code: 4pd4(D).
		6. Ligand: 6PH × 2 (1r)-2-(Phosphonooxy)-1-[(Tridecanoyloxy)methyl]ethyl pentadecanoate PDB codes: 6giq(D), 6ymx(D).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: HEM × 10 Protoporphyrin IX containing fe PDB codes: 1ezv(D), 1kb9(D), 1kyo(D), 1p84(D), 2ibz(D), 3cx5(D), 3cxh(D), 4pd4(D), 6giq(D), 6ymx(D).
		2. Ligand: HEC × 3 Heme c PDB codes: 6hu9(D), 6t0b(D), 6t15(D).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PTY × 1 Phosphatidylethanolamine PDB code: 6ymx(D).