Ligand clusters for UniProt code P06169

Ligand clusters for P06169: Pyruvate decarboxylase isozyme 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PDC1 PE=1 SV=7

		4 ligand clusters Cluster 1. 6 ligand types 12 ligands Cluster 2. 4 ligand types 6 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand
Representative protein: 2vk1A

Structures

PDB		Schematic diagram
2vk1A
2vk8A
1pvdA
1qpbA
1pydA

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: TPP × 2 Thiamine diphosphate PDB codes: 1pvd(A), 1qpb(A).
_Mg		2. Metal: _MG × 5 PDB codes: 1pvd(A), 1pyd(A), 1qpb(A), 2vk1(A), 2vk8(A).
		3. Ligand: PYR × 1 pyruvic acid Pyruvic acid PDB code: 2vk1(A).
		4. Ligand: TDP × 1 cocarboxylase Thiamin diphosphate PDB code: 1pyd(A).
		5. Ligand: PYM × 1 Pyruvamide PDB code: 1qpb(A).
		6. Ligand: TPP × 2 Thiamine diphosphate PDB codes: 2vk1(A), 2vk8(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: TPP × 2 Thiamine diphosphate PDB codes: 1pvd(A), 1qpb(A).
		2. Ligand: PYR × 1 pyruvic acid Pyruvic acid PDB code: 2vk1(A).
		3. Ligand: TDP × 1 cocarboxylase Thiamin diphosphate PDB code: 1pyd(A).
		4. Ligand: TPP × 2 Thiamine diphosphate PDB codes: 2vk1(A), 2vk8(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PYR × 1 pyruvic acid Pyruvic acid PDB code: 2vk1(A).
		2. Ligand: 2OP × 1 (2s)-2-Hydroxypropanoic acid PDB code: 2vk8(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PYM × 1 Pyruvamide PDB code: 1qpb(A).