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Ligand clusters for UniProt code P03680

Ligand clusters for P03680: DNA polymerase OS=Bacillus phage phi29 GN=2 PE=1 SV=1

Top 6 (of 38) ligand clusters
Cluster 1.
5 ligand types
9 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1xi1A  
JSmol
 

Structures

PDB   Schematic diagram
1xi1A    
2pylA    
2pyjA    
2ex3A    
2py5A    

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: DGT × 1
2'-Deoxyguanosine-5'-Triphosphate
PDB code: 2pyj(A).


 
2. Ligand: TTP × 1
Thymidine-5'-Triphosphate
PDB code: 2pyl(A).


 
3. Ligand: EDO × 3
1,2-Ethanediol
PDB codes: 2py5(A), 2pyj(A).

_Mg
 
4. Metal: _MG × 3
PDB codes: 2pyj(A), 2pyl(A),

_Mn
 
5. Metal: _MN × 1
PDB code: 2pyj(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2py5(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2py5(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2py5(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2py5(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2py5(A).

 

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