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Ligand clusters for UniProt code O33853

Ligand clusters for O33853: Endoglycoceramidase II OS=Rhodococcus sp. PE=1 SV=1

6 ligand clusters
Cluster 1.
8 ligand types
10 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
4 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2osxA  
JSmol
 

Structures

PDB   Schematic diagram
2osxA    
2oykA    
2oylA    
2osyA    
2oswA    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: 16C × 1
N-((E,2s,3r)-1,3-Dihydroxyoctadec-4-En-2-Yl)palmitamide
PDB code: 2osx(A).


 
2. Ligand: TRS × 1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 2osw(A).


 
3. Ligand: GOL × 3
Glycerol
PDB codes: 2oyk(A), 2oyl(A),


 
4. Ligand: 9MR × 1
(3r,4r,5r)-3-Hydroxy-5-(Hydroxymethyl)piperidin-4-Yl beta-D-Glucopyranoside
PDB code: 2oyk(A).


 
5. Ligand: GLC-GAL × 1
GLC=Alpha-D-Glucose, GAL=Beta-D-Galactose.
PDB code: 2osy(A).


 
6. Ligand: IDC × 1
5-Hydroxymethyl-5,6,7,8-Tetrahydro-Imidazo[1,2- A]pyridin-6yl-7,8-Diol-Glucopyranoside
PDB code: 2oyl(A).


 
7. Ligand: MNI × 1
N-{[(2r,3r,4r,5r)-3,4-Dihydroxy-5-(Hydroxymethyl) pyrrolidin-2-Yl]methyl}-4-
(Dimethylamino)benzamide
PDB code: 2oym(A).


 
8. Ligand: SIA-GAL-BGC × 1
SIA=O-Sialic acid, GAL=Beta-D-Galactose, BGC=Beta-D-Glucose.
PDB code: 2osx(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 2osx(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 6
PDB codes: 2osw(A), 2osx(A), 2osy(A), 2oyk(A), 2oyl(A), 2oym(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 4
PDB codes: 2osw(A), 2osx(A), 2oyk(A), 2oyl(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 1
PDB code: 2osx(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 1
PDB code: 2osx(A).

 

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