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Ligand clusters for UniProt code O33853
Ligand clusters for O33853: Endoglycoceramidase II OS=Rhodococcus sp. PE=1 SV=1
6 ligand clusters
Cluster 1.
8 ligand types
10 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
4 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2osxA
Structures
PDB
Schematic diagram
2osx
A
2oyk
A
2oyl
A
2osy
A
2osw
A
more ...
Cluster 1 contains 8 ligand types
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Ligand
Description
1. Ligand:
16C × 1
N-((E,2s,3r)-1,3-Dihydroxyoctadec-4-En-2-Yl)palmitamide
PDB code:
2osx
(A).
2. Ligand:
TRS × 1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code:
2osw
(A).
3. Ligand:
GOL × 3
Glycerol
PDB codes:
2oyk
(A),
2oyl
(A),
4. Ligand:
9MR × 1
(3r,4r,5r)-3-Hydroxy-5-(Hydroxymethyl)piperidin-4-Yl beta-D-Glucopyranoside
PDB code:
2oyk
(A).
5. Ligand:
GLC-GAL × 1
GLC
=Alpha-D-Glucose,
GAL
=Beta-D-Galactose.
PDB code:
2osy
(A).
6. Ligand:
IDC × 1
5-Hydroxymethyl-5,6,7,8-Tetrahydro-Imidazo[1,2- A]pyridin-6yl-7,8-Diol-Glucopyranoside
PDB code:
2oyl
(A).
7. Ligand:
MNI × 1
N-{[(2r,3r,4r,5r)-3,4-Dihydroxy-5-(Hydroxymethyl) pyrrolidin-2-Yl]methyl}-4-
(Dimethylamino)benzamide
PDB code:
2oym
(A).
8. Ligand:
SIA-GAL-BGC × 1
SIA
=O-Sialic acid,
GAL
=Beta-D-Galactose,
BGC
=Beta-D-Glucose.
PDB code:
2osx
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
Glycerol
PDB code:
2osx
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 6
PDB codes:
2osw
(A),
2osx
(A),
2osy
(A),
2oyk
(A),
2oyl
(A),
2oym
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 4
PDB codes:
2osw
(A),
2osx
(A),
2oyk
(A),
2oyl
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
2osx
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
2osx
(A).