Ligand clusters for UniProt code O15054

Ligand clusters for O15054: Lysine-specific demethylase 6B OS=Homo sapiens OX=9606 GN=KDM6B PE=1 SV=4

		Top 6 (of 15) ligand clusters Cluster 1. 8 ligand types 14 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5oy3A

Structures

PDB		Schematic diagram
5oy3A
5fp3A
6f6dA
2xueA
4askA
		more ...

Cluster 1 contains 8 ligand types

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Ligand		Description
_Fe		1. Metal: _FE × 3 PDB codes: 2xue(A), 5oy3(A), 6f6d(A).
		2. Ligand: AKG × 3 2-Oxoglutaric acid PDB codes: 2xue(A), 5oy3(A), 6f6d(A).
		3. Ligand: BCN × 2 Bicine PDB codes: 5fp3(A),
_Co		4. Metal: _CO × 2 PDB codes: 4ask(A), 5fp3(A).
		5. Ligand: 8XQ × 1 8-Hydroxyquinoline-5-Carboxylic acid PDB code: 2xxz(A).
		6. Ligand: K0I × 1 3-[[2-Pyridin-2-Yl-6-(1,2,4,5-Tetrahydro-3- Benzazepin-3-Yl)pyrimidin-4-Yl]amino]propanoic acid PDB code: 4ask(A).
		7. Ligand: YC8 × 1 3-(4-Phenylbutanoylamino)pyridine-4-Carboxylic acid PDB code: 5fp3(A).
_Ni		8. Metal: _NI × 1 PDB code: 2xxz(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 5fp3(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5oy3(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 2xue(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 2xxz(A), 5oy3(A).
		2. Ligand: TBU × 1 Tertiary-Butyl alcohol PDB code: 6f6d(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: TBU × 2 Tertiary-Butyl alcohol PDB codes: 5oy3(A), 6f6d(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 2xxz(A), 5oy3(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2xxz(A).