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PDBsum entry 4dkf

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protein ligands Protein-protein interface(s) links
Cytokine/immune system PDB id
4dkf

 

 

 

 

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Contents
Protein chains
161 a.a.
137 a.a.
214 a.a.
212 a.a.
Ligands
NAG-NAG-MAN-MAN-
BMA
×2
Waters ×126
PDB id:
4dkf
Name: Cytokine/immune system
Title: Crystal structure of human interleukin-34 bound to fab2
Structure: Interleukin-34. Chain: a, b. Fragment: active core. Synonym: il-34. Engineered: yes. Fab2 heavy chain. Chain: h, i. Engineered: yes. Fab2 light chain.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: il34, c16orf77. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell_line: tni pro. Expressed in: cricetulus griseus. Expression_system_taxid: 10029.
Resolution:
2.61Å     R-factor:   0.227     R-free:   0.256
Authors: X.Ma,Y.Chen,S.Stawicki,Y.Wu,J.F.Bazan,M.A.Starovasnik
Key ref: X.Ma et al. (2012). Structural basis for the dual recognition of helical cytokines IL-34 and CSF-1 by CSF-1R. Structure, 20, 676-687. PubMed id: 22483114
Date:
03-Feb-12     Release date:   11-Apr-12    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q6ZMJ4  (IL34_HUMAN) -  Interleukin-34 from Homo sapiens
Seq:
Struc:
242 a.a.
161 a.a.
Protein chain
Pfam   ArchSchema ?
Q6ZMJ4  (IL34_HUMAN) -  Interleukin-34 from Homo sapiens
Seq:
Struc:
242 a.a.
137 a.a.
Protein chains
No UniProt id for this chain
Struc: 214 a.a.
Protein chains
No UniProt id for this chain
Struc: 212 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
Structure 20:676-687 (2012)
PubMed id: 22483114  
 
 
Structural basis for the dual recognition of helical cytokines IL-34 and CSF-1 by CSF-1R.
X.Ma, W.Y.Lin, Y.Chen, S.Stawicki, K.Mukhyala, Y.Wu, F.Martin, J.F.Bazan, M.A.Starovasnik.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
22902366 J.Elegheert, N.Bracke, P.Pouliot, I.Gutsche, A.V.Shkumatov, N.Tarbouriech, K.Verstraete, A.Bekaert, W.P.Burmeister, D.I.Svergun, B.N.Lambrecht, B.Vergauwen, and S.N.Savvides (2012).
Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1.
  Nat Struct Mol Biol, 19, 938-947.
PDB codes: 3uez 3uf2 3uf5 4adf 4adq
23076159 K.Verstraete, and S.N.Savvides (2012).
Extracellular assembly and activation principles of oncogenic class III receptor tyrosine kinases.
  Nat Rev Cancer, 12, 753-766.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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