PDBsum entry 4dkf Go to PDB code:  Tunnel analysis for: 4dkf calculated with MOLE 2.0 PDB id 4dkf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.96 34.4 0.73 0.29 8.0 84 3 0 3 9 2 0 1  NAG 1 C NAG 2 C 2 1.23 1.39 51.7 -0.33 -0.13 17.4 84 5 6 2 10 1 1 1   3 1.28 2.52 24.4 -0.02 -0.36 2.5 92 1 0 8 3 1 0 0   4 1.30 2.09 21.4 -0.67 -0.68 2.2 104 0 0 6 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.