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PDBsum entry 4dkf
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Pore analysis for: 4dkf calculated with  MOLE 2.0
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PDB id
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4dkf
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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12 pores,
coloured by radius |
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7 pores,
coloured by radius
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7 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.88 |
2.08 |
40.0 |
-1.18 |
-0.50 |
6.1 |
85 |
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0 |
2 |
9 |
4 |
3 |
0 |
0 |
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2 |
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1.86 |
2.16 |
47.7 |
-0.91 |
-0.27 |
9.3 |
83 |
2 |
3 |
8 |
5 |
3 |
1 |
0 |
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3 |
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1.85 |
2.14 |
51.2 |
-1.03 |
-0.03 |
9.7 |
84 |
2 |
4 |
8 |
5 |
4 |
1 |
0 |
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4 |
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2.27 |
2.37 |
57.8 |
-0.92 |
-0.40 |
7.8 |
90 |
4 |
1 |
10 |
5 |
4 |
0 |
0 |
NAG 1 D NAG 2 D MAN 3 D MAN 4 D
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5 |
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2.50 |
3.93 |
69.0 |
-0.62 |
-0.37 |
5.8 |
92 |
2 |
0 |
12 |
5 |
4 |
0 |
0 |
NAG 1 D NAG 2 D MAN 3 D MAN 4 D
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6 |
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1.55 |
1.77 |
30.9 |
-0.90 |
-0.51 |
10.0 |
77 |
1 |
1 |
1 |
1 |
0 |
4 |
0 |
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7 |
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1.38 |
1.41 |
76.6 |
-0.07 |
-0.27 |
8.0 |
88 |
3 |
2 |
6 |
6 |
1 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program