› 1sed

X-ray diffraction
2.1Å resolution

Crystal Structure of Protein of Unknown Function YhaL from Bacillus subtilis

Released:
DOI: 10.2210/pdb1sed/pdb
PDB entry 1sed coloured by chain, front view.
PDB entry 1sed coloured by chain, side view.
PDB entry 1sed coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Kim Y, Joachimiak A, Evdokimova E, Savchenko A, Edwards A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126589 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hypothetical protein yhaI Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 117 amino acids
Theoretical weight: 13.66 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O07517 (Residues: 1-113; Coverage: 100%)
Gene names: BSU09980, yhaI
Sequence domains: Protein of unknown function (DUF1878)
Structure domains: YhaI-like

Ligands and Environments

4 bound ligands:
Ligand ZN 3 x ZN
Ligand NA 3 x NA
Ligand MPD 17 x MPD
Ligand GOL 6 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P1
Unit cell:
a: 56.784Å b: 64.55Å c: 64.503Å
α: 111.37° β: 107.19° γ: 107.13°
R-values:
R R work R free
0.189 0.189 0.209
Expression system: Escherichia coli BL21(DE3)

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