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An atomic view of the L-tryptophan binding site of trp repressor.

Lawson CL
Nat Struct Biol 3 986-7 (1996)
Cited: 17 times
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Articles - 1jhg mentioned but not cited (13)

  1. Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility. Hallen MA, Keedy DA, Donald BR. Proteins 81 18-39 (2013)
  2. Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction. Su Y, Zhou A, Xia X, Li W, Sun Z. Protein Sci 18 2550-2558 (2009)
  3. Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria. Kim Y, Joachimiak G, Ye Z, Binkowski TA, Zhang R, Gornicki P, Callahan SM, Hess WR, Haselkorn R, Joachimiak A. Proc Natl Acad Sci U S A 108 10109-10114 (2011)
  4. OSPREY 3.0: Open-source protein redesign for you, with powerful new features. Hallen MA, Martin JW, Ojewole A, Jou JD, Lowegard AU, Frenkel MS, Gainza P, Nisonoff HM, Mukund A, Wang S, Holt GT, Zhou D, Dowd E, Donald BR. J Comput Chem 39 2494-2507 (2018)
  5. Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design. Hallen MA, Gainza P, Donald BR. J Chem Theory Comput 11 2292-2306 (2015)
  6. Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information. Pellegrini-Calace M, Thornton JM. Nucleic Acids Res 33 2129-2140 (2005)
  7. Fast gap-free enumeration of conformations and sequences for protein design. Roberts KE, Gainza P, Hallen MA, Donald BR. Proteins 83 1859-1877 (2015)
  8. Local conformational changes in the DNA interfaces of proteins. Sunami T, Kono H. PLoS One 8 e56080 (2013)
  9. Molecular-replacement phasing using predicted protein structures from AWSEM-Suite. Jin S, Miller MD, Chen M, Schafer NP, Lin X, Chen X, Phillips GN, Wolynes PG. IUCrJ 7 1168-1178 (2020)
  10. Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction. Tan CW, Jones DT. BMC Bioinformatics 9 94 (2008)
  11. A library of protein surface patches discriminates between native structures and decoys generated by structure prediction servers. Gamliel R, Kedem K, Kolodny R, Keasar C. BMC Struct Biol 11 20 (2011)
  12. Guest-protein incorporation into solvent channels of a protein host crystal (hostal). Sprenger J, Carey J, Schulz A, Drouard F, Lawson CL, von Wachenfeldt C, Linse S, Lo Leggio L. Acta Crystallogr D Struct Biol 77 471-485 (2021)
  13. Crystal structures of Val58Ile tryptophan repressor in a domain-swapped array in the presence and absence of L-tryptophan. Sprenger J, Lawson CL, von Wachenfeldt C, Lo Leggio L, Carey J. Acta Crystallogr F Struct Biol Commun 77 215-225 (2021)


Articles citing this publication (4)

  1. Structure-based mutational analysis of the C-terminal DNA-binding domain of human immunodeficiency virus type 1 integrase: critical residues for protein oligomerization and DNA binding. Lutzke RA, Plasterk RH. J Virol 72 4841-4848 (1998)
  2. The solution structure of the amino-terminal HHCC domain of HIV-2 integrase: a three-helix bundle stabilized by zinc. Eijkelenboom AP, van den Ent FM, Vos A, Doreleijers JF, Hård K, Tullius TD, Plasterk RH, Kaptein R, Boelens R. Curr Biol 7 739-746 (1997)
  3. Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites. Berkholz DS, Driggers CM, Shapovalov MV, Dunbrack RL, Karplus PA. Proc Natl Acad Sci U S A 109 449-453 (2012)
  4. Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry. Berkholz DS, Krenesky PB, Davidson JR, Karplus PA. Nucleic Acids Res 38 D320-5 (2010)


Related citations provided by authors (1)

  1. Structural Consequences of Twp Methyl Additions in the Escherichia Coli Trp Repressor L-Tryptophan Binding Pocket. Lawson CL Biological Structure and Dynamics: Proceedings of the Ninth Conversation in the Discipline Biomolecular Stereodynamics, Held at the State University of New York at Albany, June 20-24, 1995 1 83- (1996)

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