Default parameters
Standard assessment:
| Parameter | Value |
|---|---|
|
filter
Turn on filter on conserved and structurally invariant residues throughout predictions
|
True |
|
interface
Distance defining interface residues
|
10.0 |
|
contact
Distance defining contact residues
|
5.0 |
|
clash
Distance defining clashing residues
|
3.0 |
|
identity
Minimum required sequence identity and presence
|
70.0 |
|
rms
RMS fit on receptor or receptor interface, mass-weighted
|
receptor |
|
sofist
SOFIST options (CLUS, RMS, RMS, PERCENTAGE)
|
0,4.0,2.0,70.0 |
Peptide assessment:
| Parameter | Value |
|---|---|
|
filter
Turn on filter on conserved and structurally invariant residues throughout predictions
|
True |
|
interface
Distance defining interface residues
|
8.0 |
|
contact
Distance defining contact residues
|
4.0 |
|
clash
Distance defining clashing residues
|
3.0 |
|
identity
Minimum required sequence identity and presence
|
70.0 |
|
rms
RMS fit on receptor or receptor interface, mass-weighted
|
receptor |
|
sofist
SOFIST options (CLUS, RMS, RMS, PERCENTAGE)
|
0,4.0,2.0,70.0 |
|
peptide
Minimum identity required. Use of this flag implies CAPRI defaults.
|
90.0 |