› 2v3l

Solution NMR

Orientational and dynamical heterogeneity of Rhodamine 6G terminally attached to a DNA helix

Released:
DOI: 10.2210/pdb2v3l/pdb
PDB entry 2v3l coloured by chain, ensemble of 2 models, front view.
PDB entry 2v3l coloured by chain, ensemble of 2 models, side view.
PDB entry 2v3l coloured by chain, ensemble of 2 models, top view.
Source organism: synthetic construct
Primary publication:
Orientational and dynamical heterogeneity of rhodamine 6G terminally attached to a DNA helix revealed by NMR and single-molecule fluorescence spectroscopy.
Neubauer H, Gaiko N, Berger S, Schaffer J, Eggeling C, Tuma J, Verdier L, Seidel CA, Griesinger C, Volkmer A
J. Am. Chem. Soc. 129 12746-55 (2007)
PMID: 17900110

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-115861 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*GP*AP*AP*TP*GP*GP*CP*GP*AP*AP *TP*GP*GP*CP*GP*CP*TP*TP*TP*G)-3' Chain: A
Molecule details ›
Chain: A
Length: 20 nucleotides
Theoretical weight: 6.23 KDa
Source organism: synthetic construct
Expression system: Not provided
5'-D(*CP*AP*AP*AP*GP*CP*GP*CP*CP*AP *TP*TP*CP*GP*CP*CP*AP*TP*TP*C)-3' Chain: B
Molecule details ›
Chain: B
Length: 20 nucleotides
Theoretical weight: 6.04 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand R6G 1 x R6G
No modified residues

Experiments and Validation Details

Entry percentile scores
Expression system: Not provided

Quick links

Citations

7 review citations

Fluorescence quenching by photoinduced electron transfer: a reporter for conformational dynamics of macromolecules.
Doose et al. (2009)
6 more

1 mention without citation

Optimizing methods to recover absolute FRET efficiency from immobilized single molecules.
McCann et al. (2010)