Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 9YA    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O38 C36 O C doub 1.22 N N
2 C14 C15 C C sing 1.53 N N
3 C14 C13 C C sing 1.53 N N
4 C15 C13 C C sing 1.53 N N
5 C36 O37 C O sing 1.35 N N
6 C36 C33 C C sing 1.47 N N
7 C13 C12 C C sing 1.53 N N
8 C34 C33 C C doub 1.35 N Y
9 C34 S35 C S sing 1.71 N Y
10 C33 N32 C N sing 1.33 N Y
11 N32 C31 N C doub 1.29 N Y
12 S35 C31 S C sing 1.76 N Y
13 C12 C11 C C sing 1.51 N N
14 C31 N16 C N sing 1.39 N N
15 C11 N16 C N sing 1.36 N Y
16 C11 C10 C C doub 1.35 N Y
17 N16 N17 N N sing 1.4 N Y
18 C10 C09 C C sing 1.51 N N
19 C10 C18 C C sing 1.41 N Y
20 N17 C18 N C doub 1.32 N Y
21 C09 C08 C C sing 1.51 N N
22 C18 C19 C C sing 1.48 N N
23 C08 C39 C C doub 1.38 N Y
24 C08 C07 C C sing 1.38 N Y
25 C19 C24 C C doub 1.39 N Y
26 C19 C20 C C sing 1.39 N Y
27 C24 C23 C C sing 1.38 N Y
28 C39 C40 C C sing 1.38 N Y
29 C07 C06 C C doub 1.38 N Y
30 C20 C21 C C doub 1.39 N Y
31 C23 C22 C C doub 1.38 N Y
32 C40 C05 C C doub 1.38 N Y
33 C21 C22 C C sing 1.39 N Y
34 C21 C25 C C sing 1.48 N N
35 C06 C05 C C sing 1.38 N Y
36 C05 S02 C S sing 1.76 N N
37 C30 C25 C C doub 1.39 N Y
38 C30 C29 C C sing 1.38 N Y
39 C25 C26 C C sing 1.39 N Y
40 C29 C28 C C doub 1.38 N Y
41 C26 C27 C C doub 1.38 N Y
42 N01 S02 N S sing 1.66 N N
43 S02 O04 S O doub 1.42 N N
44 S02 O03 S O doub 1.42 N N
45 C28 C27 C C sing 1.38 N Y
46 C20 H1 C H sing 1.08 N N
47 C22 H2 C H sing 1.08 N N
48 C23 H3 C H sing 1.08 N N
49 C12 H4 C H sing 1.09 N N
50 C12 H5 C H sing 1.09 N N
51 C13 H6 C H sing 1.09 N N
52 C15 H7 C H sing 1.09 N N
53 C15 H8 C H sing 1.09 N N
54 C14 H9 C H sing 1.09 N N
55 C14 H10 C H sing 1.09 N N
56 C06 H11 C H sing 1.08 N N
57 C07 H12 C H sing 1.08 N N
58 C09 H13 C H sing 1.09 N N
59 C09 H14 C H sing 1.09 N N
60 C24 H15 C H sing 1.08 N N
61 C26 H16 C H sing 1.08 N N
62 C27 H17 C H sing 1.08 N N
63 C28 H18 C H sing 1.08 N N
64 C29 H19 C H sing 1.08 N N
65 C30 H20 C H sing 1.08 N N
66 C34 H21 C H sing 1.08 N N
67 C39 H22 C H sing 1.08 N N
68 C40 H23 C H sing 1.08 N N
69 N01 H24 N H sing 0.97 N N
70 N01 H25 N H sing 0.97 N N
71 O37 H26 O H sing 0.97 N N