Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YLA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 66


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 1.963 -2.323 -1.4
2 N N N N N N 0 3.724 -2.28 -3.074
3 O O O N N N 0 1.882 -3.51 -1.609
4 N1 N N1 N Y N 0 -8.806 3.522 -0.61
5 O1 O O1 N N N 0 10.448 1.868 0.933
6 C2 C C2 N Y N 0 -8.436 3.283 0.635
7 C3 C C3 N N N 0 11.586 2.706 0.601
8 N3 N N3 N Y N 0 -7.444 2.47 0.934
9 C4 C C4 N Y N 0 -6.767 1.847 -0.025
10 C5 C C5 N Y N 0 -7.122 2.068 -1.366
11 C6 C C6 N Y N 0 -8.187 2.945 -1.635
12 N6 N N6 N N N 0 -8.583 3.201 -2.936
13 C7 C C7 N N N 0 12.482 2.802 1.765
14 N7 N N7 N Y N 0 -6.285 1.324 -2.129
15 C8 C C8 N Y N 0 -5.459 0.677 -1.36
16 C9 C C9 N N N 0 13.196 2.878 2.693
17 N9 N N9 N Y N 0 -5.715 0.966 -0.052
18 CA C CA R N N 0 3.121 -1.537 -1.96
19 CB C CB N N N 0 4.167 -1.32 -0.865
20 C1' C C1' R N N 0 -5.0 0.434 1.11
21 C2' C C2' R N N 0 -5.734 -0.804 1.684
22 O2' O O2' N N N 0 -6.747 -0.411 2.612
23 C3' C C3' S N N 0 -4.588 -1.556 2.403
24 O3' O O3' N N N 0 -4.594 -1.259 3.8
25 C4' C C4' R N N 0 -3.306 -1.014 1.741
26 O4' O O4' N N N 0 -3.712 -0.089 0.718
27 C5' C C5' N N N 0 -2.516 -2.166 1.117
28 O5' O O5' N N N 0 -1.275 -1.671 0.609
29 OAD O OAD N N N 0 9.67 2.196 -1.119
30 OAF O OAF N N N 0 -0.828 -3.326 -1.244
31 OAI O OAI N N N 0 0.388 -3.68 0.939
32 CAM C CAM N N N 0 6.329 -0.201 -0.303
33 CAN C CAN N N N 0 5.282 -0.418 -1.398
34 CAO C CAO N N N 0 7.444 0.702 -0.835
35 NAW N NAW N N N 0 8.446 0.91 0.214
36 OAY O OAY N N N 0 1.019 -1.703 -0.675
37 CBA C CBA N N N 0 9.527 1.677 -0.03
38 PBN P PBN N N N 0 -0.188 -2.611 -0.117
39 HN H HN N N N 0 4.062 -3.18 -2.767
40 HNA H HNA N N N 0 3.072 -2.381 -3.838
41 H2 H H2 N N N 0 -8.965 3.774 1.438
42 H3 H H3 N N N 0 12.126 2.268 -0.239
43 H3A H H3A N N N 0 11.236 3.701 0.328
44 HN6 H HN6 N N N 0 -9.32 3.807 -3.108
45 HN6A H HN6A N N N 0 -8.123 2.773 -3.676
46 H8 H H8 N N N 0 -4.685 0.008 -1.706
47 H9 H H9 N N N 0 13.835 2.946 3.524
48 HA H HA N N N 0 2.764 -0.571 -2.319
49 HB H HB N N N 0 3.698 -0.848 -0.003
50 HBA H HBA N N N 0 4.588 -2.281 -0.569
51 H1' H H1' N N N 0 -4.887 1.203 1.875
52 H2' H H2' N N N 0 -6.157 -1.411 0.883
53 HO2' H HO2' N N N 0 -7.235 -1.151 2.998
54 H3' H H3' N N N 0 -4.677 -2.631 2.242
55 HO3' H HO3' N N N 0 -5.404 -1.526 4.256
56 H4' H H4' N N N 0 -2.695 -0.501 2.483
57 H5' H H5' N N N 0 -2.321 -2.925 1.874
58 H5'A H H5'A N N N 0 -3.093 -2.604 0.303
59 HAM H HAM N N N 0 5.859 0.272 0.56
60 HAMA H HAMA N N N 0 6.749 -1.162 -0.007
61 HAN H HAN N N N 0 5.752 -0.89 -2.26
62 HANA H HANA N N N 0 4.862 0.543 -1.694
63 HAO H HAO N N N 0 7.913 0.229 -1.697
64 HAOA H HAOA N N N 0 7.023 1.663 -1.131
65 HNAW H HNAW N N N 0 8.331 0.495 1.083
66 HAI H HAI N N N 0 0.822 -3.281 1.706