Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9KJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C20 C C20 N N N 0 0.508 1.741 -0.219
2 C2 C C22 R N N 0 -3.746 -1.533 -0.083
3 C3 C C24 S N N 0 -4.139 -0.472 -1.115
4 C4 C C26 S N N 0 -4.467 0.835 -0.387
5 O4 O O27 N N N 0 -4.765 1.853 -1.345
6 O6 O O01 N N N 0 -2.438 2.994 1.921
7 C6 C C02 N N N 0 -3.6 2.533 1.229
8 C5 C C03 R N N 0 -3.259 1.26 0.452
9 O5 O O04 N N N 0 -2.928 0.216 1.369
10 C1 C C05 S N N 0 -2.566 -1.017 0.744
11 O1 O O06 N N N 0 -1.441 -0.806 -0.111
12 C07 C C07 R N N 0 -0.222 -0.541 0.587
13 C08 C C08 R N N 0 0.56 -1.853 0.859
14 O09 O O09 N N N 0 0.141 -2.445 2.09
15 C10 C C10 R N N 0 2.023 -1.373 0.954
16 C11 C C11 N N N 0 2.951 -2.395 0.295
17 O12 O O12 N N N 0 2.471 -2.697 -1.017
18 N13 N N13 N N N 0 2.107 -0.085 0.24
19 C14 C C14 N N N 0 3.117 -0.14 -0.826
20 P15 P P15 N N N 0 4.604 0.775 -0.302
21 O16 O O16 N N N 0 5.3 0.007 0.93
22 O17 O O17 N N N 0 5.639 0.866 -1.532
23 O18 O O18 N N N 0 4.22 2.14 0.122
24 C19 C C19 R N N 0 0.773 0.236 -0.31
25 O21 O O21 N N N 0 1.357 2.43 -1.14
26 O2 O O23 N N N 0 -3.368 -2.736 -0.756
27 O3 O O25 N N N 0 -5.285 -0.915 -1.845
28 H1A H H1 N N N 0 -0.534 1.942 -0.466
29 H2A H H2 N N N 0 0.715 2.086 0.794
30 H2 H H3 N N N 0 -4.592 -1.734 0.574
31 H3 H H4 N N N 0 -3.31 -0.308 -1.804
32 H4 H H5 N N N 0 -5.328 0.684 0.264
33 HO4 H H6 N N Y 0 -5.518 1.648 -1.916
34 HO6 H H7 N N Y 0 -2.581 3.8 2.436
35 H61 H H8 N N N 0 -4.39 2.319 1.949
36 H62 H H9 N N N 0 -3.939 3.302 0.535
37 H5 H H10 N N N 0 -2.41 1.451 -0.204
38 H1 H H11 N N N 0 -2.31 -1.751 1.508
39 H12 H H12 N N N 0 -0.415 -0.003 1.515
40 H13 H H13 N N N 0 0.437 -2.553 0.032
41 H14 H H14 N N N 0 0.6 -3.269 2.306
42 H15 H H15 N N N 0 2.301 -1.236 1.999
43 H16 H H16 N N N 0 3.957 -1.983 0.228
44 H17 H H17 N N N 0 2.97 -3.306 0.893
45 H18 H H18 N N N 0 3.012 -3.34 -1.495
46 H20 H H20 N N N 0 3.38 -1.179 -1.024
47 H21 H H21 N N N 0 2.713 0.312 -1.732
48 H22 H H22 N N N 0 5.513 -0.919 0.747
49 H23 H H23 N N N 0 6.456 1.341 -1.324
50 H24 H H24 N N N 0 0.695 -0.1 -1.343
51 H25 H H25 N N N 0 1.243 3.39 -1.136
52 HO2 H H26 N N Y 0 -3.102 -3.452 -0.162
53 HO3 H H27 N N Y 0 -5.149 -1.743 -2.326