Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1RL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 126


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -113.336 26.678 9.336
2 C2 C C2 N N N 0 -112.205 26.344 8.513
3 C3 C C3 N N N 0 -110.926 26.702 8.914
4 C4 C C4 N N N 0 -110.689 27.402 10.154
5 C5 C C5 N Y N 0 -111.925 28.47 12.345
6 C6 C C6 N Y N 0 -113.109 28.792 12.948
7 C7 C C7 N Y N 0 -114.438 28.447 12.386
8 C8 C C8 N Y N 0 -114.333 27.633 11.273
9 C9 C C9 N Y N 0 -113.141 27.385 10.589
10 C10 C C10 N Y N 0 -111.838 27.746 11.012
11 C11 C C11 N N N 0 -110.982 28.926 13.101
12 C12 C C12 S N N 0 -111.337 29.756 14.088
13 C13 C C13 N N N 0 -110.595 29.38 15.346
14 C14 C C14 N N N 0 -115.686 28.497 13.242
15 C15 C C15 N N N 0 -112.722 26.396 6.051
16 C16 C C16 N N N 0 -112.905 25.702 4.724
17 C17 C C17 N N N 0 -113.481 26.488 3.548
18 C18 C C18 N N N 0 -112.559 27.409 2.745
19 C19 C C19 N N N 0 -111.217 27.86 3.323
20 C20 C C20 S N N 0 -110.729 29.271 3.149
21 C21 C C21 S N N 0 -110.972 30.062 4.423
22 C22 C C22 R N N 0 -109.934 31.098 4.796
23 C23 C C23 R N N 0 -110.47 31.936 5.952
24 C24 C C24 R N N 0 -109.753 31.756 7.265
25 C25 C C25 S N N 0 -110.242 32.849 8.192
26 C26 C C26 R N N 0 -110.687 32.26 9.51
27 C27 C C27 S N N 0 -110.845 33.312 10.587
28 C28 C C28 N N N 0 -111.209 32.851 11.999
29 C29 C C29 N N N 0 -110.91 31.528 12.378
30 C30 C C30 N N N 0 -112.301 24.342 4.495
31 C31 C C31 N N N 0 -109.305 29.156 2.721
32 C32 C C32 N N N 0 -109.599 31.989 3.656
33 C33 C C33 N N N 0 -108.265 31.818 7.122
34 C34 C C34 N N N 0 -111.983 31.539 9.3
35 C35 C C35 N N N 0 -109.233 34.967 7.706
36 C36 C C36 N N N 0 -107.936 35.674 7.472
37 C37 C C37 N N N 0 -110.855 35.691 11.165
38 N1 N N1 N N N 0 -112.386 25.639 7.251
39 O01 O O01 N N N 0 -109.892 26.346 8.065
40 C01 C C01 N Y N 0 -108.609 26.696 8.456
41 C02 C C02 N Y N 0 -108.363 27.377 9.656
42 N3 N N3 N N N 0 -109.392 27.712 10.467
43 O1 O O1 N N N 0 -114.461 26.366 8.98
44 O2 O O2 N N N 0 -115.508 27.217 10.675
45 O3 O O3 N N N 0 -112.791 29.585 14.325
46 O4 O O4 N N N 0 -109.828 28.607 12.942
47 O5 O O5 N N N 0 -111.031 31.107 13.743
48 O6 O O6 N N N 0 -110.916 34.651 10.239
49 O7 O O7 N N N 0 -109.241 33.768 8.389
50 O8 O O8 N N N 0 -110.286 35.523 7.393
51 O9 O O9 N N N 0 -111.778 31.598 6.158
52 O10 O O10 N N N 0 -112.169 30.705 4.267
53 O11 O O11 N N N 0 -112.849 27.607 6.12
54 C03 C C03 N Y N 0 -107.599 26.326 7.584
55 C04 C C04 N Y N 0 -106.283 26.64 7.903
56 C05 C C05 N Y N 0 -105.99 27.318 9.086
57 C06 C C06 N Y N 0 -107.006 27.688 9.962
58 O O O N N N 0 -106.691 28.375 11.153
59 C07 C C07 N N N 0 -105.354 28.729 11.494
60 C08 C C08 N N N 0 -105.297 29.207 12.949
61 N N N N N N 0 -105.674 28.102 13.872
62 C09 C C09 N N N 0 -105.093 28.338 15.198
63 C38 C C38 N N N 0 -105.276 27.165 16.133
64 C39 C C39 N N N 0 -107.125 28.006 13.973
65 C C C N N N 0 -107.53 26.613 13.562
66 H131 H H131 N N N 0 -110.884 30.061 16.16
67 H132 H H132 N N N 0 -110.847 28.346 15.625
68 H133 H H133 N N N 0 -109.512 29.458 15.17
69 H143 H H143 N N N 0 -115.725 27.607 13.887
70 H141 H H141 N N N 0 -115.665 29.402 13.867
71 H142 H H142 N N N 0 -116.574 28.519 12.594
72 H171 H H171 N N N 0 -114.525 26.395 3.286
73 H181 H H181 N N N 0 -112.859 27.743 1.763
74 H191 H H191 N N N 0 -110.609 27.152 3.866
75 H201 H H201 N N N 0 -111.303 29.741 2.337
76 H211 H H211 N N N 0 -111.042 29.344 5.253
77 H221 H H221 N N N 0 -109.022 30.581 5.13
78 H231 H H231 N N N 0 -110.395 32.995 5.664
79 H241 H H241 N N N 0 -110.031 30.781 7.691
80 H251 H H251 N N N 0 -111.111 33.333 7.722
81 H261 H H261 N N N 0 -109.93 31.534 9.841
82 H271 H H271 N N N 0 -109.767 33.349 10.804
83 H281 H H281 N N N 0 -111.686 33.527 12.693
84 H291 H H291 N N N 0 -110.585 30.82 11.63
85 H302 H H302 N N N 0 -111.942 23.934 5.451
86 H303 H H303 N N N 0 -113.062 23.67 4.072
87 H301 H H301 N N N 0 -111.458 24.429 3.794
88 H313 H H313 N N N 0 -108.883 30.161 2.575
89 H312 H H312 N N N 0 -108.731 28.627 3.496
90 H311 H H311 N N N 0 -109.25 28.594 1.777
91 H323 H H323 N N N 0 -108.843 32.723 3.973
92 H321 H H321 N N N 0 -109.2 31.388 2.826
93 H322 H H322 N N N 0 -110.506 32.516 3.324
94 H331 H H331 N N N 0 -107.795 31.681 8.107
95 H333 H H333 N N N 0 -107.929 31.022 6.442
96 H332 H H332 N N N 0 -107.977 32.797 6.711
97 H341 H H341 N N N 0 -112.32 31.104 10.253
98 H343 H H343 N N N 0 -112.741 32.246 8.932
99 H342 H H342 N N N 0 -111.841 30.737 8.561
100 H362 H H362 N N N 0 -108.131 36.659 7.022
101 H361 H H361 N N N 0 -107.412 35.806 8.43
102 H363 H H363 N N N 0 -107.311 35.077 6.792
103 H373 H H373 N N N 0 -110.933 36.655 10.64
104 H371 H H371 N N N 0 -111.686 35.595 11.88
105 H372 H H372 N N N 0 -109.898 35.644 11.706
106 H11 H H11 N N N 0 -112.281 24.646 7.208
107 H21 H H21 N N N 0 -115.309 26.782 9.854
108 H91 H H91 N N N 0 -112.129 32.111 6.876
109 H101 H H101 N N N 0 -112.359 31.214 5.046
110 H031 H H031 N N N 0 -107.83 25.801 6.669
111 H041 H H041 N N N 0 -105.485 26.358 7.233
112 H051 H H051 N N N 0 -104.965 27.558 9.325
113 H072 H H072 N N N 0 -104.702 27.852 11.372
114 H071 H H071 N N N 0 -105.01 29.536 10.831
115 H081 H H081 N N N 0 -104.275 29.541 13.181
116 H082 H H082 N N N 0 -105.996 30.046 13.083
117 H092 H H092 N N N 0 -104.016 28.53 15.081
118 H091 H H091 N N N 0 -105.577 29.221 15.642
119 H382 H H382 N N N 0 -104.823 27.398 17.108
120 H383 H H383 N N N 0 -106.35 26.967 16.266
121 H381 H H381 N N N 0 -104.789 26.276 15.705
122 H391 H H391 N N N 0 -107.595 28.743 13.306
123 H392 H H392 N N N 0 -107.44 28.196 15.01
124 HC2 H HC2 N N N 0 -108.623 26.514 13.629
125 HC1 H HC1 N N N 0 -107.208 26.428 12.526
126 HC3 H HC3 N N N 0 -107.053 25.881 14.23