Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1NK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 72


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 7.213 -0.705 -0.201
2 C2 C C2 N N N 0 6.903 0.648 0.444
3 C3 C C3 N N N 0 6.394 0.428 1.87
4 C4 C C4 N N N 0 8.174 1.499 0.48
5 C5 C C5 S N N 0 5.83 1.369 -0.375
6 C6 C C6 N N N 0 6.394 1.73 -1.75
7 O7 O O7 N N N 0 6.86 0.545 -2.399
8 N8 N N8 N N N 0 4.668 0.491 -0.539
9 C9 C C9 N N N 0 3.721 0.441 0.419
10 O10 O O10 N N N 0 3.83 1.124 1.418
11 C11 C C11 N Y N 0 2.55 -0.444 0.254
12 C12 C C12 N Y N 0 2.425 -1.23 -0.897
13 C13 C C13 N Y N 0 1.337 -2.058 -1.058
14 C14 C C14 N Y N 0 0.351 -2.119 -0.075
15 C15 C C15 N Y N 0 0.469 -1.331 1.087
16 C16 C C16 N Y N 0 1.574 -0.499 1.247
17 C17 C C17 N N N 0 -0.571 -1.39 2.132
18 O18 O O18 N N N 0 -0.455 -0.634 3.241
19 O19 O O19 N N N 0 -1.532 -2.119 1.991
20 C20 C C20 N Y N 0 -0.817 -3.009 -0.251
21 C21 C C21 N Y N 0 -0.653 -4.4 -0.286
22 C22 C C22 N Y N 0 -1.773 -5.19 -0.452
23 C23 C C23 N Y N 0 -3.024 -4.587 -0.578
24 N24 N N24 N Y N 0 -3.154 -3.274 -0.542
25 C25 C C25 N Y N 0 -2.109 -2.474 -0.379
26 C26 C C26 N N N 0 -2.304 -1.008 -0.339
27 O27 O O27 N N N 0 -1.349 -0.271 -0.194
28 N28 N N28 N N N 0 -3.542 -0.489 -0.462
29 C29 C C29 N Y N 0 -3.74 0.887 -0.326
30 C30 C C30 N Y N 0 -4.899 1.362 0.295
31 C31 C C31 N Y N 0 -5.119 2.697 0.441
32 C32 C C32 N Y N 0 -4.172 3.615 -0.036
33 C33 C C33 N Y N 0 -2.994 3.141 -0.667
34 C34 C C34 N Y N 0 -2.786 1.764 -0.802
35 C35 C C35 N Y N 0 -2.061 4.089 -1.137
36 C36 C C36 N Y N 0 -2.327 5.411 -0.967
37 N37 N N37 N Y N 0 -3.436 5.835 -0.373
38 C38 C C38 N Y N 0 -4.354 5.009 0.092
39 N39 N N39 N N N 0 -5.492 5.509 0.702
40 O40 O O40 N N N 0 -4.124 -5.362 -0.742
41 C41 C C41 N N N 0 -5.379 -4.69 -0.866
42 H1 H H1 N N N 0 7.775 -1.321 0.5
43 H2 H H2 N N N 0 6.28 -1.207 -0.458
44 H3 H H3 N N N 0 7.803 -0.55 -1.104
45 H4 H H4 N N N 0 7.159 -0.085 2.453
46 H5 H H5 N N N 0 6.174 1.392 2.329
47 H6 H H6 N N N 0 5.489 -0.178 1.844
48 H7 H H7 N N N 0 8.536 1.655 -0.536
49 H8 H H8 N N N 0 7.953 2.462 0.939
50 H9 H H9 N N N 0 8.938 0.985 1.063
51 H10 H H10 N N N 0 5.527 2.279 0.144
52 H11 H H11 N N N 0 5.613 2.191 -2.354
53 H12 H H12 N N N 0 7.222 2.429 -1.631
54 H13 H H13 N N N 0 7.233 0.699 -3.279
55 H14 H H14 N N N 0 4.581 -0.054 -1.336
56 H15 H H15 N N N 0 3.186 -1.187 -1.662
57 H16 H H16 N N N 0 1.247 -2.662 -1.949
58 H17 H H17 N N N 0 1.671 0.107 2.135
59 H18 H H18 N N N 0 -1.162 -0.707 3.898
60 H19 H H19 N N N 0 0.326 -4.844 -0.186
61 H20 H H20 N N N 0 -1.681 -6.265 -0.484
62 H21 H H21 N N N 0 -4.296 -1.072 -0.644
63 H22 H H22 N N N 0 -5.632 0.659 0.664
64 H23 H H23 N N N 0 -6.019 3.049 0.923
65 H24 H H24 N N N 0 -1.891 1.391 -1.278
66 H25 H H25 N N N 0 -1.151 3.769 -1.623
67 H26 H H26 N N N 0 -1.615 6.139 -1.326
68 H27 H H27 N N N 0 -6.167 4.9 1.043
69 H28 H H28 N N N 0 -5.616 6.467 0.789
70 H29 H H29 N N N 0 -5.354 -4.031 -1.734
71 H30 H H30 N N N 0 -6.174 -5.425 -0.991
72 H31 H H31 N N N 0 -5.566 -4.101 0.032