BioModels

•   DeBoeck2021 - Modular approach to modeling the cell cycle, 5 ODE model with 3 bistable switches
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: A modular approach for modeling the cell cycle based on functional response curves., PLoS computational biology (2021)
•   Adlung2021 - Cell-to-cell variability in JAK2/STAT5 pathway
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: Cell-to-cell variability in JAK2/STAT5 pathway components and cytoplasmic volumes defines survival threshold in erythroid progenitor cells., Cell reports (2021)
•   Hammaren-Geissen2022_PPToP_Model12
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: Protein-Peptide Turnover Profiling reveals the order of PTM addition and removal during protein maturation., Nature communications (2022)
•   Lu2019 - Genome scale metabolic model for Saccharomyces cerevisiae - yeastGEM8.5.0
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism., Nature communications (2019)
•   DeBoeck2021 - Modular approach to modeling the cell cycle, simple cell cycle model
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: A modular approach for modeling the cell cycle based on functional response curves., PLoS computational biology (2021)
•   Canto-Encalada2022-FBA of simultaneous degradation of ammonia and pollutants
  
  Submitter: Lucian Smith | Published date: 2024-09-02
  Publication: Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds., PLoS computational biology (2022)
•   Singh2023 - Human rheumatoid arthritis synovial fibroblast signaling model
  
  Submitter: vidisha singh | Published date: 2024-09-11
  Publication: A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint., NPJ systems biology and applications (2023)

•   Novak1997 - Cell Cycle
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Bungay2003_Thrombin_Generation
•   Hettling2011_CreatineKinase

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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