May, 2024
Protein synthesis and post-translational modification
Model(s) associated with this Model of the Month: BIOMD0000001078.
Last updated by: Eva-Maria Geissen
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BioModels is a repository of mathematical models of biological and biomedical systems. It hosts a vast selection of existing literature-based physiologically and pharmaceutically relevant mechanistic models in standard formats. Our mission is to provide the systems modelling community with reproducible, high-quality, freely-accessible models published in the scientific literature. More information about using BioModels such as model submission, update, publication, or reviewers access can be found in the FAQ.
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1,073 models
1,537 models
833 models
1,132 classes
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Recently published
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Zeng2022 - Prediction of HIV Growth Inhibition using ImageMol
Submitter: Zainab Ashimiyu-Abdusalam | Published date: 2024-05-13Publication: Accurate prediction of molecular targets using a self-supervised image representation learning framework., Research square (2022) -
Wong2024 - Cytotoxicity Prediction from Human Cell Lines
Submitter: Zainab Ashimiyu-Abdusalam | Published date: 2024-05-13Publication: Discovery of a structural class of antibiotics with explainable deep learning., Nature (2024) -
Gonzalez2021 - QSAR Prediction Model for CYP450 enzymes Inhibitor and Substrate
Submitter: Zainab Ashimiyu-Abdusalam | Published date: 2024-05-10Publication: Development of Robust Quantitative Structure-Activity Relationship Models for CYP2C9, CYP2D6, and CYP3A4 Catalysis and Inhibition., Drug metabolism and disposition: the biological fate of chemicals (2021) -
Lesiczka2024 - Genome-scale Metabolic Model Midichloria mitochondrii
Submitter: William Scott | Published date: 2024-05-10Publication: Deep sequencing of 16 Ixodes ricinus ticks unveils insights into their interactions with endosymbionts, bioRixv (2024) -
Lesiczka2024 - Genome-scale metabolic model of Rickettsia helvetica
Submitter: William Scott | Published date: 2024-05-10Publication: Deep sequencing of 16 Ixodes ricinus ticks unveils insights into their interactions with endosymbionts, bioRixv (2024) -
Turon2023 - H3D virtual screening models
Submitter: Zainab Ashimiyu-Abdusalam | Published date: 2024-05-13Publication: First fully-automated AI/ML virtual screening cascade implemented at a drug discovery centre in Africa., Nature communications (2023) -
Shah2020 - Predicting Human Liver Microsomal Stability of small molecules
Submitter: Zainab Ashimiyu-Abdusalam | Published date: 2024-05-13Publication: Predicting liver cytosol stability of small molecules., Journal of cheminformatics (2020)
Recently accessed
- Novak1997 - Cell Cycle
- Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
- Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
- Haffez2017 - RAR interaction with synthetic analogues
- Stortelder1997 - Thrombin Generation Amidolytic Activity
- Hettling2011_CreatineKinase
- Bungay2003_Thrombin_Generation
News
- 10/03/2022: Freely create a reviewer account for your models
- 12/04/2021: Standards for curation of FBC models
- 27/02/2021: Reproducibility in Systems Biology Modelling manuscript published
- 08/12/2020: Reproducibility
- 12/10/2020: Retirement party for the classic BioModels website
- 06/07/2020: COVID-19
- 17/06/2020: New updates for Release 5.1.9
- 03/06/2020: New updates for Release 5.1.8
- 03/06/2020: BioModels Parameters Manuscript accepted
- 17/01/2020: Planned maintenance
How to cite BioModels
- Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob
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Nucl. Acids Res. 2020
- Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob
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Nucl. Acids Res. 2018
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Acknowledgements
- BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).
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