N-sulfoglucosamine sulfohydrolase

 

N-sulfoglucosamine sulfohydrolase (SGSH; also known as sulfamidase, sulfamate sulfohydrolase and heparan N-sulfatase; EC 3.10.1.1) belongs to the sulfatase family and catalyses the cleavage of N-linked sulfate groups from the glycosaminoglycans heparan sulfate and heparin. The active site is characterised by the amino-acid sequence motif C(X)PSR that is highly conserved among most sulfatases from all species. The leading cysteine is post-translationally converted to a formylglycine (FGly) residue, which is crucial for the catalytic process. In humans mucopolysaccharidosis type IIIA (Sanfilippo A syndrome), a fatal childhood-onset neurodegenerative disease with mild facial, visceral and skeletal abnormalities, is caused by an inherited deficiency of this enzyme.

 

Reference Protein and Structure

Sequence
P51688 UniProt (3.10.1.1) IPR017849 (Sequence Homologues) (PDB Homologues)
Biological species
Homo sapiens (Human) Uniprot
PDB
4mhx - Crystal Structure of Sulfamidase (2.0 Å) PDBe PDBsum 4mhx
Catalytic CATH Domains
3.40.720.10 CATHdb (see all for 4mhx)
Cofactors
Formylglycine (1), Calcium(2+) (1)
Click To Show Structure

Enzyme Reaction (EC:3.10.1.1)

N-sulfo-D-glucosamine(1-)
CHEBI:57868ChEBI
+
water
CHEBI:15377ChEBI
2-ammonio-2-deoxy-D-glucopyranose
CHEBI:58723ChEBI
+
sulfate
CHEBI:16189ChEBI
Alternative enzyme names: 2-desoxy-D-glucoside-2-sulphamate sulphohydrolase (sulphamate sulphohydrolase), Heparin sulfamidase, Sulfoglucosamine sulfamidase, Sulphamidase,

Enzyme Mechanism

Introduction

The active-site formylglycine (FGly70), which is intrinsically reactive, undergoes hydration to form the resting state of the enzyme with a gem-diol group. Coordination of one of the hydroxyl groups of the gem-diol to a Ca2+ ion facilitates the development of a negative charge on the O atom as its proton is lost to a base. The negatively charged O atom nucleophilically attacks the sulfur centre of the N-linked sulfate group on the glucosamine substrate, resulting in a covalently bound enzyme–substrate complex with a pentavalent sulfur transition state. An acid (possibly His181) facilitates the cleavage of the S-N bond by protonating the bridging N atom to form an amine leaving group on the N-desulfated substrate, which diffuses away, leaving an O-sulfated enzyme. Finally, in a step that underlines the importance of the formylglycine residue, another base (His125) deprotonates the second hydroxyl group, resulting in a negatively charged O atom that forms a double bond with the Cβ atom as the C-O bond between it and the bridging O atom of the sulfate group breaks, eliminating the sulfate ion and regenerating the formylglycine residue.

Catalytic Residues Roles

UniProt PDB* (4mhx)
Arg282, Arg74, Lys123 Arg282A, Arg74A, Lys123A Help stabilise the reactive intermediates and transition states formed during the course of the reaction. electrostatic stabiliser
Asp31, Asp273, Asp32, Asn274 Asp31A, Asp273A, Asp32A, Asn274A Forms part of the calcium binding site. metal ligand
His181, His125 His181A, His125A Acts as a general acid/base. proton acceptor, proton donor
*PDB label guide - RESx(y)B(C) - RES: Residue Name; x: Residue ID in PDB file; y: Residue ID in PDB sequence if different from PDB file; B: PDB Chain; C: Biological Assembly Chain if different from PDB. If label is "Not Found" it means this residue is not found in the reference PDB.

Chemical Components

proton transfer, bimolecular nucleophilic addition, overall reactant used, bimolecular nucleophilic substitution, overall product formed, unimolecular elimination by the conjugate base, native state of cofactor regenerated, inferred reaction step, native state of enzyme regenerated

References

  1. Sidhu NS et al. (2014), Acta Crystallogr D Biol Crystallogr, 70, 1321-1335. Structure of sulfamidase provides insight into the molecular pathology of mucopolysaccharidosis IIIA. DOI:10.1107/S1399004714002739. PMID:24816101.

Catalytic Residues Roles

Residue Roles
Asp273A metal ligand
Asp32A metal ligand
Asp31A metal ligand
Asn274A metal ligand
Arg282A electrostatic stabiliser

Chemical Components

proton transfer, ingold: bimolecular nucleophilic addition, overall reactant used

Catalytic Residues Roles

Residue Roles
Asp273A metal ligand
Asp32A metal ligand
Asp31A metal ligand
Asn274A metal ligand
Arg74A electrostatic stabiliser
Lys123A electrostatic stabiliser
Arg282A electrostatic stabiliser
His181A proton donor
Asp273A proton acceptor

Chemical Components

proton transfer, ingold: bimolecular nucleophilic substitution, overall reactant used, overall product formed

Catalytic Residues Roles

Residue Roles
Asp273A metal ligand
Asp32A metal ligand
Asp31A metal ligand
Asn274A metal ligand
Arg74A electrostatic stabiliser
Lys123A electrostatic stabiliser
Arg282A electrostatic stabiliser
His125A proton acceptor

Chemical Components

proton transfer

Catalytic Residues Roles

Residue Roles
Arg74A electrostatic stabiliser
Lys123A electrostatic stabiliser
Arg282A electrostatic stabiliser
His125A electrostatic stabiliser
Asp273A metal ligand
Asp32A metal ligand
Asp31A metal ligand
Asn274A metal ligand

Chemical Components

ingold: unimolecular elimination by the conjugate base, overall product formed, native state of cofactor regenerated

Catalytic Residues Roles

Residue Roles
Asp273A metal ligand
Asp32A metal ligand
Asp31A metal ligand
Asn274A metal ligand
Asp273A proton donor
His125A proton donor
His181A proton acceptor

Chemical Components

proton transfer, inferred reaction step, native state of enzyme regenerated

Contributors

Gemma L. Holliday