N-sulfoglucosamine sulfohydrolase
N-sulfoglucosamine sulfohydrolase (SGSH; also known as sulfamidase, sulfamate sulfohydrolase and heparan N-sulfatase; EC 3.10.1.1) belongs to the sulfatase family and catalyses the cleavage of N-linked sulfate groups from the glycosaminoglycans heparan sulfate and heparin. The active site is characterised by the amino-acid sequence motif C(X)PSR that is highly conserved among most sulfatases from all species. The leading cysteine is post-translationally converted to a formylglycine (FGly) residue, which is crucial for the catalytic process. In humans mucopolysaccharidosis type IIIA (Sanfilippo A syndrome), a fatal childhood-onset neurodegenerative disease with mild facial, visceral and skeletal abnormalities, is caused by an inherited deficiency of this enzyme.
Reference Protein and Structure
- Sequence
-
P51688
(3.10.1.1)
(Sequence Homologues)
(PDB Homologues)
- Biological species
-
Homo sapiens (Human)

- PDB
-
4mhx
- Crystal Structure of Sulfamidase
(2.0 Å)
- Catalytic CATH Domains
-
3.40.720.10
(see all for 4mhx)
- Cofactors
- Formylglycine (1), Calcium(2+) (1)
Enzyme Reaction (EC:3.10.1.1)
Enzyme Mechanism
Introduction
The active-site formylglycine (FGly70), which is intrinsically reactive, undergoes hydration to form the resting state of the enzyme with a gem-diol group. Coordination of one of the hydroxyl groups of the gem-diol to a Ca2+ ion facilitates the development of a negative charge on the O atom as its proton is lost to a base. The negatively charged O atom nucleophilically attacks the sulfur centre of the N-linked sulfate group on the glucosamine substrate, resulting in a covalently bound enzyme–substrate complex with a pentavalent sulfur transition state. An acid (possibly His181) facilitates the cleavage of the S-N bond by protonating the bridging N atom to form an amine leaving group on the N-desulfated substrate, which diffuses away, leaving an O-sulfated enzyme. Finally, in a step that underlines the importance of the formylglycine residue, another base (His125) deprotonates the second hydroxyl group, resulting in a negatively charged O atom that forms a double bond with the Cβ atom as the C-O bond between it and the bridging O atom of the sulfate group breaks, eliminating the sulfate ion and regenerating the formylglycine residue.
Catalytic Residues Roles
| UniProt | PDB* (4mhx) | ||
| Arg282, Arg74, Lys123 | Arg282A, Arg74A, Lys123A | Help stabilise the reactive intermediates and transition states formed during the course of the reaction. | electrostatic stabiliser |
| Asp31, Asp273, Asp32, Asn274 | Asp31A, Asp273A, Asp32A, Asn274A | Forms part of the calcium binding site. | metal ligand |
| His181, His125 | His181A, His125A | Acts as a general acid/base. | proton acceptor, proton donor |
Chemical Components
proton transfer, bimolecular nucleophilic addition, overall reactant used, bimolecular nucleophilic substitution, overall product formed, unimolecular elimination by the conjugate base, native state of cofactor regenerated, inferred reaction step, native state of enzyme regeneratedReferences
- Sidhu NS et al. (2014), Acta Crystallogr D Biol Crystallogr, 70, 1321-1335. Structure of sulfamidase provides insight into the molecular pathology of mucopolysaccharidosis IIIA. DOI:10.1107/S1399004714002739. PMID:24816101.
Step 1. Water activates the formyl glycine post-translational modification.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Asp273A | metal ligand |
| Asp32A | metal ligand |
| Asp31A | metal ligand |
| Asn274A | metal ligand |
| Arg282A | electrostatic stabiliser |
Chemical Components
proton transfer, ingold: bimolecular nucleophilic addition, overall reactant usedStep 2. Asp273 abstracts a proton from the FGL70 residue. The glucosamine product abstracts a proton from His181.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Asp273A | metal ligand |
| Asp32A | metal ligand |
| Asp31A | metal ligand |
| Asn274A | metal ligand |
| Arg74A | electrostatic stabiliser |
| Lys123A | electrostatic stabiliser |
| Arg282A | electrostatic stabiliser |
| His181A | proton donor |
| Asp273A | proton acceptor |
Chemical Components
proton transfer, ingold: bimolecular nucleophilic substitution, overall reactant used, overall product formedStep 3. His125 abstracts a proton from the sulfonated Fgl intermediate.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Asp273A | metal ligand |
| Asp32A | metal ligand |
| Asp31A | metal ligand |
| Asn274A | metal ligand |
| Arg74A | electrostatic stabiliser |
| Lys123A | electrostatic stabiliser |
| Arg282A | electrostatic stabiliser |
| His125A | proton acceptor |
Chemical Components
proton transferStep 4. The Fgl70 oxyanion then eliminated the sulfate from the protein.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Arg74A | electrostatic stabiliser |
| Lys123A | electrostatic stabiliser |
| Arg282A | electrostatic stabiliser |
| His125A | electrostatic stabiliser |
| Asp273A | metal ligand |
| Asp32A | metal ligand |
| Asp31A | metal ligand |
| Asn274A | metal ligand |
Chemical Components
ingold: unimolecular elimination by the conjugate base, overall product formed, native state of cofactor regeneratedStep 5. Inferred return step to regenerate the correct protonation states for the catalytic residues.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Asp273A | metal ligand |
| Asp32A | metal ligand |
| Asp31A | metal ligand |
| Asn274A | metal ligand |
| Asp273A | proton donor |
| His125A | proton donor |
| His181A | proton acceptor |