Xyloglucan:xyloglucosyl transferase

 

Xyloglucan Endotransglycosylase (XET) is sourced from Populus tremula. It cleaves and religates xyloglucan (a soluble hemicellulose with a backbone composed of beta(1->4)-linked glucose residues similar to cellulose) in plant cell walls via a transglycosylation mechanism. XET is therefore a key enzyme in plant cell processes requiring cell wall remodelling, such as germination, growth, fruit ripening, organ abscission and vascular differentiation. Specifically, XET breaks a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment onto the O-4 of the non-reducing terminal glucose residue of an acceptor. This acceptor can be a xyloglucan or an oligosaccharide of xyloglucan. During processes such as fruit ripening, hydrolytic enzymes can be produced to degrade the cell wall. After cell wall expansion and elongation, cell wall loosening is a temporary requirement that must be followed by reinforcement of the cell wall. In the first step XET catalyses endolytic cleavage of a cross-linking xyloglucan polymer, which permits cellulose microfibres to separate allowing cell expansion. In the second step XET transfers the newly generated end to another sugar polymer, restoring stable cell wall structure. XET requires sugar residues in both the donor and acceptor sites before it is able to catalyse the reaction.

 

Reference Protein and Structure

Sequence
Q8GZD5 UniProt (2.4.1.207) IPR016455 (Sequence Homologues) (PDB Homologues)
Biological species
Populus tremula x Populus tremuloides (European aspen) Uniprot
PDB
1un1 - Xyloglucan endotransglycosylase native structure. (2.1 Å) PDBe PDBsum 1un1
Catalytic CATH Domains
2.60.120.200 CATHdb (see all for 1un1)
Click To Show Structure

Enzyme Reaction (EC:2.4.1.207)

alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-beta-D-Glc-(->4)]-beta-D-Glc
CHEBI:137466ChEBI
+
alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-beta-D-Glc-(1->4)]-beta-D-Glc-(1->4)]-beta-D-Glc-(1->4)-beta-D-Glc-(1->4)-beta-D-GlC-(1->4)-D-Glc
CHEBI:137468ChEBI
alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-beta-D-Glc-(->4)]-beta-D-Glc
CHEBI:137466ChEBI
+
alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-[alpha-D-Xyl-(1->6)-beta-D-Glc-(1->4)]-beta-D-Glc-(1->4)]-beta-D-Glc-(1->4)-beta-D-Glc-(1->4)-beta-D-GlC-(1->4)-D-Glc
CHEBI:137468ChEBI
Alternative enzyme names: Endo-xyloglucan transferase, Xyloglucan endotransglycosylase,

Enzyme Mechanism

Introduction

The reaction proceeds using a double displacement mechanism via two transition states (first being oxocarbenium-like in character). Sugar residues bind to the acceptor and donor sites, aiding orientation of the glycosidic bond relative to the catalytic residues. Glu 85 performs nucleophilic attack upon the anomeric carbon of the sugar ring. Asp 87 stabilises Glu 85 through hydrogen bonding. Glu 89 facilitates fission of the glycosidic bond by general acid catalysis. The nascent non-reducing end diffuses away from the hydrolytically stable covalent glycosyl-enzyme intermediate. The acceptor carbohydrate is deprotonated by Glu 89. This activates the acceptor carbohydrate, causing it to perform nucleophilic attack upon the anomeric carbon. This gives retention of configuration.

Catalytic Residues Roles

UniProt PDB* (1un1)
Glu107 Glu85(91)B Glu 85 performs nucleophilic attack upon the anomeric carbon of the sugar ring. covalently attached, hydrogen bond acceptor, nucleofuge, nucleophile
Asp109 Asp87(93)B Asp 87 stabilises Glu 85 through hydrogen bonding. hydrogen bond donor, electrostatic stabiliser
Glu111 Glu89(95)B 1. Glu 89 facilitates fission of the glycosidic bond by general acid catalysis. 2. Glu 89 activates the acceptor carbohydrate, causing it to perform nucleophilic attack upon the anomeric carbon. proton acceptor, proton donor
*PDB label guide - RESx(y)B(C) - RES: Residue Name; x: Residue ID in PDB file; y: Residue ID in PDB sequence if different from PDB file; B: PDB Chain; C: Biological Assembly Chain if different from PDB. If label is "Not Found" it means this residue is not found in the reference PDB.

Chemical Components

bimolecular nucleophilic substitution, overall reactant used, enzyme-substrate complex formation, intermediate formation, proton transfer, overall product formed, intermediate terminated, enzyme-substrate complex cleavage, native state of enzyme regenerated

References

  1. Johansson P et al. (2004), Plant Cell, 16, 874-886. Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding. DOI:10.1105/tpc.020065. PMID:15020748.
  2. Hrmova M et al. (2009), FEBS J, 276, 437-456. Substrate specificity and catalytic mechanism of a xyloglucan xyloglucosyl transferase HvXET6 from barley (Hordeum vulgare L.). DOI:10.1111/j.1742-4658.2008.06791.x. PMID:19076217.

Catalytic Residues Roles

Residue Roles
Glu85(91)B covalently attached
Asp87(93)B electrostatic stabiliser
Glu85(91)B hydrogen bond acceptor
Asp87(93)B hydrogen bond donor
Glu89(95)B proton donor
Glu85(91)B nucleophile

Chemical Components

ingold: bimolecular nucleophilic substitution, overall reactant used, enzyme-substrate complex formation, intermediate formation, proton transfer, overall product formed

Catalytic Residues Roles

Residue Roles
Glu85(91)B hydrogen bond acceptor
Asp87(93)B hydrogen bond donor
Glu85(91)B covalently attached, nucleofuge
Glu89(95)B proton acceptor

Chemical Components

ingold: bimolecular nucleophilic substitution, proton transfer, intermediate terminated, enzyme-substrate complex cleavage, overall product formed, native state of enzyme regenerated

Contributors

Fiona J. E. Morgan, Gemma L. Holliday, Morwenna Hall