Xyloglucan:xyloglucosyl transferase
Xyloglucan Endotransglycosylase (XET) is sourced from Populus tremula. It cleaves and religates xyloglucan (a soluble hemicellulose with a backbone composed of beta(1->4)-linked glucose residues similar to cellulose) in plant cell walls via a transglycosylation mechanism. XET is therefore a key enzyme in plant cell processes requiring cell wall remodelling, such as germination, growth, fruit ripening, organ abscission and vascular differentiation. Specifically, XET breaks a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment onto the O-4 of the non-reducing terminal glucose residue of an acceptor. This acceptor can be a xyloglucan or an oligosaccharide of xyloglucan. During processes such as fruit ripening, hydrolytic enzymes can be produced to degrade the cell wall. After cell wall expansion and elongation, cell wall loosening is a temporary requirement that must be followed by reinforcement of the cell wall. In the first step XET catalyses endolytic cleavage of a cross-linking xyloglucan polymer, which permits cellulose microfibres to separate allowing cell expansion. In the second step XET transfers the newly generated end to another sugar polymer, restoring stable cell wall structure. XET requires sugar residues in both the donor and acceptor sites before it is able to catalyse the reaction.
Reference Protein and Structure
- Sequence
-
Q8GZD5
(2.4.1.207)
(Sequence Homologues)
(PDB Homologues)
- Biological species
-
Populus tremula x Populus tremuloides (European aspen)

- PDB
-
1un1
- Xyloglucan endotransglycosylase native structure.
(2.1 Å)
- Catalytic CATH Domains
-
2.60.120.200
(see all for 1un1)
Enzyme Reaction (EC:2.4.1.207)
Enzyme Mechanism
Introduction
The reaction proceeds using a double displacement mechanism via two transition states (first being oxocarbenium-like in character). Sugar residues bind to the acceptor and donor sites, aiding orientation of the glycosidic bond relative to the catalytic residues. Glu 85 performs nucleophilic attack upon the anomeric carbon of the sugar ring. Asp 87 stabilises Glu 85 through hydrogen bonding. Glu 89 facilitates fission of the glycosidic bond by general acid catalysis. The nascent non-reducing end diffuses away from the hydrolytically stable covalent glycosyl-enzyme intermediate. The acceptor carbohydrate is deprotonated by Glu 89. This activates the acceptor carbohydrate, causing it to perform nucleophilic attack upon the anomeric carbon. This gives retention of configuration.
Catalytic Residues Roles
| UniProt | PDB* (1un1) | ||
| Glu107 | Glu85(91)B | Glu 85 performs nucleophilic attack upon the anomeric carbon of the sugar ring. | covalently attached, hydrogen bond acceptor, nucleofuge, nucleophile |
| Asp109 | Asp87(93)B | Asp 87 stabilises Glu 85 through hydrogen bonding. | hydrogen bond donor, electrostatic stabiliser |
| Glu111 | Glu89(95)B | 1. Glu 89 facilitates fission of the glycosidic bond by general acid catalysis. 2. Glu 89 activates the acceptor carbohydrate, causing it to perform nucleophilic attack upon the anomeric carbon. | proton acceptor, proton donor |
Chemical Components
bimolecular nucleophilic substitution, overall reactant used, enzyme-substrate complex formation, intermediate formation, proton transfer, overall product formed, intermediate terminated, enzyme-substrate complex cleavage, native state of enzyme regeneratedReferences
- Johansson P et al. (2004), Plant Cell, 16, 874-886. Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding. DOI:10.1105/tpc.020065. PMID:15020748.
- Hrmova M et al. (2009), FEBS J, 276, 437-456. Substrate specificity and catalytic mechanism of a xyloglucan xyloglucosyl transferase HvXET6 from barley (Hordeum vulgare L.). DOI:10.1111/j.1742-4658.2008.06791.x. PMID:19076217.
Step 1. Glu89, positioned by a hydrogen bond to Asp87 acts as a nucleophile and attacks the carbon on glucose.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Glu85(91)B | covalently attached |
| Asp87(93)B | electrostatic stabiliser |
| Glu85(91)B | hydrogen bond acceptor |
| Asp87(93)B | hydrogen bond donor |
| Glu89(95)B | proton donor |
| Glu85(91)B | nucleophile |
Chemical Components
ingold: bimolecular nucleophilic substitution, overall reactant used, enzyme-substrate complex formation, intermediate formation, proton transfer, overall product formedStep 2. Glu89 acts as a base catalyst to activate incoming hydroxyl nucleophile to attack the covalent intermediate.
Download: Image, Marvin FileCatalytic Residues Roles
| Residue | Roles |
|---|---|
| Glu85(91)B | hydrogen bond acceptor |
| Asp87(93)B | hydrogen bond donor |
| Glu85(91)B | covalently attached, nucleofuge |
| Glu89(95)B | proton acceptor |