Protein-glutamine gamma-glutamyltransferase (bacterial)

 

Transglutaminases, TGase, catalyse an acyl transfer reaction in which gamma-caboxyamide groups of the peptide-bound glutamine residues act as acyl donors with e-amino lysine groups as acyl acceptors. The microbial tranglutaminase, MTG, from Streptoverticllium mobaraense is Ca2+ independent unlike mammalian TGases and folds in to aplate-like shape with a deep cleft at the edge of the molecule. MTG is secreted from the cytoplasm and is activated by proteolytic processing. The additional pro-sequence consisting of 45 amino acid residues at the N terminus is cleaved off, resulting in the active form, the mature enzyme. Industrial applications of MTG include improving the physical and textural properties of protein-rich foods.

 

Reference Protein and Structure

Sequence
P81453 UniProt (2.3.2.13) IPR015107 (Sequence Homologues) (PDB Homologues)
Biological species
Streptomyces mobaraensis (Streptoverticillium mobaraense) Uniprot
PDB
1iu4 - Crystal Structure Analysis of the Microbial Transglutaminase (2.4 Å) PDBe PDBsum 1iu4
Catalytic CATH Domains
3.90.1360.10 CATHdb (see all for 1iu4)
Click To Show Structure

Enzyme Reaction (EC:2.3.2.13)

glutamine residue
CHEBI:32677ChEBI
+
alkylamine
CHEBI:13759ChEBI
ammonia
CHEBI:16134ChEBI
+
N(5)-alkyl-L-glutamine residue
CHEBI:83697ChEBI
Alternative enzyme names: R-glutaminyl-peptide:amine gamma-glutamyl transferase, Factor XIIIa, Fibrin stabilizing factor, Fibrinoligase, Glutaminylpeptide gamma-glutamyltransferase, Polyamine transglutaminase, Tissue transglutaminase, Transglutaminase, TGase, Protein-glutamine:amine gamma-glutamyltransferase,

Enzyme Mechanism

Introduction

MTG is involved in catalysing an acyl transfer reaction between protein glutamine and alkylamine, producing protein N(5)-alkylglutamine and ammonia. The residues Cys 64, Asp 255 and His 274 superimpose well on the 'Cys, His, Asp' catalytic triad of other transglutaminases, such as Factor XIII. However, the relative positions of MTG His and Asp seem to be reversed relative to the Cys residue and therefore the catalytic triad is not conserved in the active site of MTG, Hence, a cysteine-like protease mechanism is proposed, in which Asp 255 plays the role of the His residue in factor XIII-like TGases. Cys 64 is sufficiently exposed to the solvent and is deprotonated by water. The thiolate ion of Cys 64 nucleophilically attacks an acyl donor, the carbonyl C of the substrate Gln residue side chain. Electrostatic interaction of Asp 255 with water facilitates donation of a proton from Asp 255 to the resulting oxyanion from nucleophilic attack, and ammonia is released. The Asp 255 gamma-carboxyl group and the His 274 imidazole ring form a hydrogen bond to allow a favourable conformation. The Asp 255 oxygen is negatively charged and nucleophilically attacks a proton of a Lys residue acyl acceptor. Lys 269 side chain acts as an acyl acceptor as the NH attacks the transition state acyl group. Cys 64 N and Trp 272 Ne1 contribute to the stabilising oxyanion hole by forming hydrogen bonds. The product is released from the oxyanion intermediate.

Catalytic Residues Roles

UniProt PDB* (1iu4)
Cys140 Cys64A The Cys S is deprotonated by water and the resulting thiolate ion nucleophilically attacks the acyl group of the Gln substrate side chain. Cys 64 N forms part of the transition state-stabilising oxyanion hole. covalently attached, nucleofuge, nucleophile, proton acceptor, proton donor, electrostatic stabiliser
His350 His274A The carboxyl group of Asp 255 forms a hydrogen bond with His 274 imidazole ring to stabilise the transition state and ensure a favourable conformation hydrogen bond donor, electrostatic stabiliser
Asp331 Asp255A Electrostatic interaction with water initiates Asp 255 to donate a proton to the oxyanion intermediate. The carboxyl group of Asp 255 forms a hydrogen bond with His 275 imidazole ring to stabilise the transition state and ensure a favourable conformation. The negatively charged side chain oxygen on Asp 255 nucleophilically attacks a proton of the Cys residue acyl group. proton acceptor, hydrogen bond acceptor, electrostatic stabiliser, proton donor
Trp348 Trp272A Cys 64 N and Trp 272 Ne1 contribute to the stabilising oxyanion hole by forming hydrogen bonds. electrostatic stabiliser
*PDB label guide - RESx(y)B(C) - RES: Residue Name; x: Residue ID in PDB file; y: Residue ID in PDB sequence if different from PDB file; B: PDB Chain; C: Biological Assembly Chain if different from PDB. If label is "Not Found" it means this residue is not found in the reference PDB.

Chemical Components

proton transfer, bimolecular nucleophilic addition, enzyme-substrate complex formation, intermediate formation, overall reactant used, heterolysis, elimination (not covered by the Ingold mechanisms), overall product formed, intermediate collapse, bimolecular nucleophilic substitution, unimolecular elimination by the conjugate base, enzyme-substrate complex cleavage, intermediate terminated, native state of enzyme regenerated

References

  1. Kashiwagi T et al. (2002), J Biol Chem, 277, 44252-44260. Crystal Structure of Microbial Transglutaminase from Streptoverticillium mobaraense. DOI:10.1074/jbc.m203933200. PMID:12221081.

Catalytic Residues Roles

Residue Roles
Trp272A electrostatic stabiliser
Cys64A electrostatic stabiliser
His274A electrostatic stabiliser
Asp255A electrostatic stabiliser, hydrogen bond acceptor
His274A hydrogen bond donor
Cys64A proton donor

Chemical Components

proton transfer

Catalytic Residues Roles

Residue Roles
Trp272A electrostatic stabiliser
Cys64A electrostatic stabiliser
His274A hydrogen bond donor
Asp255A hydrogen bond acceptor, electrostatic stabiliser
His274A electrostatic stabiliser
Cys64A nucleophile

Chemical Components

ingold: bimolecular nucleophilic addition, enzyme-substrate complex formation, intermediate formation, overall reactant used

Catalytic Residues Roles

Residue Roles
Cys64A electrostatic stabiliser
Trp272A electrostatic stabiliser
His274A hydrogen bond donor
Asp255A hydrogen bond acceptor, electrostatic stabiliser
His274A electrostatic stabiliser
Asp255A proton donor

Chemical Components

heterolysis, elimination (not covered by the Ingold mechanisms), overall product formed

Catalytic Residues Roles

Residue Roles
Cys64A covalently attached
Asp255A hydrogen bond acceptor
His274A hydrogen bond donor
Asp255A electrostatic stabiliser
His274A electrostatic stabiliser
Asp255A proton acceptor

Chemical Components

intermediate collapse, overall reactant used, ingold: bimolecular nucleophilic addition, ingold: bimolecular nucleophilic substitution

Catalytic Residues Roles

Residue Roles
Cys64A electrostatic stabiliser
Trp272A electrostatic stabiliser
Asp255A hydrogen bond acceptor
His274A hydrogen bond donor
Asp255A electrostatic stabiliser
His274A electrostatic stabiliser
Cys64A nucleofuge

Chemical Components

ingold: unimolecular elimination by the conjugate base, enzyme-substrate complex cleavage, intermediate terminated, overall product formed, heterolysis

Catalytic Residues Roles

Residue Roles
Cys64A proton acceptor

Chemical Components

proton transfer, native state of enzyme regenerated

Contributors

Emma Penn, Gemma L. Holliday, Morwenna Hall