Arsenate reductase

 

Arsenate reductase (ArsC) from Staphylococcus aureus catalyses the reduction of arsenate to arsenite. It participates in the arsenic detoxification system of the gram-positive bacterium. ArsC also catalyses dephosphorylation in addition to reduction, although at a reduced efficiency.

Arsenate reductase has a PTPase-I fold typical for low molecular weight tyrosine phosphatases which includes the catalytic P-loop and the similarity is corresponds to the similarity between arsenate and phosphate ions. The structural similarity of this fold has resulted in arsenate reductase displaying phosphatase activity in vitro as well as being able to reduce arsenate.

 

Reference Protein and Structure

Sequence
P0A006 UniProt (1.20.4.4) IPR014064 (Sequence Homologues) (PDB Homologues)
Biological species
Staphylococcus aureus (Bacteria) Uniprot
PDB
1ljl - Wild Type pI258 S. aureus arsenate reductase (2.01 Å) PDBe PDBsum 1ljl
Catalytic CATH Domains
3.40.50.2300 CATHdb (see all for 1ljl)
Cofactors
Potassium(1+) (1) Metal MACiE
Click To Show Structure

Enzyme Reaction (EC:1.20.4.1)

L-cysteine residue
CHEBI:29950ChEBI
+
arsenate(2-)
CHEBI:48597ChEBI
+
hydron
CHEBI:15378ChEBI
water
CHEBI:15377ChEBI
+
L-cystine residue
CHEBI:50058ChEBI
+
arsenite(1-)
CHEBI:29242ChEBI
Alternative enzyme names: ArsC, Arsenate:glutaredoxin oxidoreductase, Arsenate reductase (glutaredoxin),

Enzyme Mechanism

Introduction

In the following mechanism, the main chain residues that are activating and stabilising the arsenite and Cys10 thiolate are omitted for clarity.

Ser 17 hydrogen bonds to the thiol hydrogen of Cys 10, lowering the pKa and increasing the nucleophilicity of the thiol S atom. Arg 16 polarises the substrate, making the As atom more electrophilic. S atom of Cys 10 nucleophilically attacks the As of the arsenate substrate. The transition state is stabilised by Asp 105 via a water molecule. A hydroxyl group of arsenate is protonated by an acidic water molecule, and leaves, forming a Cys 10-HAsO3- intermediate. The Cys 82 S atom nucleophilically attacks Cys 10 S atom, forming a Cys10-Cys82 disulphide intermediate. Electrons from the As-S bond shuttle to the arsenic, giving the release of arsenite. The Cys 89 S atom attacks Cys 82 S atom, forming a Cys 82 - Cys 89 disulphide intermediate, and breaking the Cys 10 - Cys 82 disulphide and regenerating Cys 10. The Cys 89 S atom is nucleophilically attacked by an S atom of thioredoxin at the surface of ArsC. This breaks the Cys 82 - Cys 89 disulphide, and forms one between Cys 89 and thioredoxin. The second S atom of thioredoxin nucleophilically attacks the first S atom of thioredoxin, breaking the Cys 89 - thioredoxin disulphide, and forming reduced thioredoxin.

Catalytic Residues Roles

UniProt PDB* (1ljl)
Thr63, Asp65, Asn13, Ser36 Thr63A, Asp65A, Asn13A, Ser36A Form K+ binding site
Cys10 Cys10A Nucleophilically attacks the As atom of arsenate, resulting in the loss of a water molecule. electrophile, electrofuge, nucleofuge, nucleophile
Asp105 Asp105A Stabilises the transition state via a water molecule. hydrogen bond acceptor, electrostatic stabiliser
Cys82 Cys82A Nucleophilically attacks the S atom of Cys 10, forming a disulphide bridge, breaking the As-S bond and causing the release of arsenite. hydrogen bond acceptor, nucleofuge, nucleophile, electrofuge, electrophile
Cys89 Cys89A Nucleophilically attacks the S atom of Cys 82, forming a disulphide between Cys 82 and Cys 89, and breaking the one between Cys 10 and Cys 82, reforming Cys 10. hydrogen bond acceptor, nucleofuge, nucleophile
Ser14 (main-N), Arg16 (main-N), Thr11 (main-N), Gly12 (main-N), Asn13 (main-N), Ser17, Cys15 (main-N), Arg16 Ser14A (main-N), Arg16A (main-N), Thr11A (main-N), Gly12A (main-N), Asn13A (main-N), Ser17A, Cys15A (main-N), Arg16A Stabilises the nucleophilic thiolate form of Cys 10. Also helps stabilise the negatively charged intermediates formed during the course of the reaction. hydrogen bond donor, electrostatic stabiliser
*PDB label guide - RESx(y)B(C) - RES: Residue Name; x: Residue ID in PDB file; y: Residue ID in PDB sequence if different from PDB file; B: PDB Chain; C: Biological Assembly Chain if different from PDB. If label is "Not Found" it means this residue is not found in the reference PDB.

Chemical Components

bimolecular nucleophilic substitution, proton transfer, overall reactant used, enzyme-substrate complex formation, intermediate formation, overall product formed, enzyme-substrate complex cleavage, intermediate terminated, cyclisation, decyclisation, intramolecular nucleophilic substitution, intermediate collapse, native state of enzyme regenerated

References

  1. Messens J et al. (2002), Proc Natl Acad Sci U S A, 99, 8506-8511. All intermediates of the arsenate reductase mechanism, including an intramolecular dynamic disulfide cascade. DOI:10.1073/pnas.132142799. PMID:12072565.
  2. Roos G et al. (2006), J Mol Biol, 360, 826-838. Interplay Between Ion Binding and Catalysis in the Thioredoxin-coupled Arsenate Reductase Family. DOI:10.1016/j.jmb.2006.05.054. PMID:16797027.
  3. Messens J et al. (2006), J Mol Biol, 362, 1-17. Arsenate Reduction: Thiol Cascade Chemistry with Convergent Evolution. DOI:10.1016/j.jmb.2006.07.002. PMID:16905151.
  4. Evans B et al. (1996), Biochemistry, 35, 13609-13617. Site-Directed Mutagenesis, Kinetic, and Spectroscopic Studies of the P-Loop Residues in a Low Molecular Weight Protein Tyrosine Phosphatase†. DOI:10.1021/bi9605651. PMID:8885840.

Catalytic Residues Roles

Residue Roles
Arg16A electrostatic stabiliser
Thr11A (main-N) hydrogen bond donor, electrostatic stabiliser
Gly12A (main-N) hydrogen bond donor, electrostatic stabiliser
Asn13A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser14A (main-N) hydrogen bond donor, electrostatic stabiliser
Cys15A (main-N) hydrogen bond donor, electrostatic stabiliser
Arg16A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser17A hydrogen bond donor, electrostatic stabiliser
Cys82A hydrogen bond acceptor
Asp105A hydrogen bond acceptor, electrostatic stabiliser
Cys10A nucleophile

Chemical Components

ingold: bimolecular nucleophilic substitution, proton transfer, overall reactant used, enzyme-substrate complex formation, intermediate formation, overall product formed

Catalytic Residues Roles

Residue Roles
Thr11A (main-N) hydrogen bond donor, electrostatic stabiliser
Gly12A (main-N) hydrogen bond donor, electrostatic stabiliser
Asn13A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser14A (main-N) hydrogen bond donor, electrostatic stabiliser
Cys15A (main-N) hydrogen bond donor, electrostatic stabiliser
Arg16A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser17A hydrogen bond donor
Cys82A hydrogen bond acceptor
Asp105A hydrogen bond acceptor
Cys82A nucleophile
Cys10A electrophile, electrofuge

Chemical Components

ingold: bimolecular nucleophilic substitution, enzyme-substrate complex cleavage, intermediate terminated, overall product formed, cyclisation

Catalytic Residues Roles

Residue Roles
Thr11A (main-N) hydrogen bond donor, electrostatic stabiliser
Gly12A (main-N) hydrogen bond donor, electrostatic stabiliser
Asn13A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser14A (main-N) hydrogen bond donor, electrostatic stabiliser
Cys15A (main-N) hydrogen bond donor, electrostatic stabiliser
Arg16A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser17A hydrogen bond donor
Cys82A electrofuge, electrophile
Cys10A nucleofuge
Cys89A nucleophile

Chemical Components

ingold: bimolecular nucleophilic substitution, cyclisation, decyclisation

Catalytic Residues Roles

Residue Roles
Thr11A (main-N) hydrogen bond donor, electrostatic stabiliser
Gly12A (main-N) hydrogen bond donor, electrostatic stabiliser
Asn13A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser14A (main-N) hydrogen bond donor, electrostatic stabiliser
Cys15A (main-N) hydrogen bond donor, electrostatic stabiliser
Arg16A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser17A hydrogen bond donor, electrostatic stabiliser
Cys82A electrofuge, electrophile
Cys89A nucleofuge

Chemical Components

ingold: bimolecular nucleophilic substitution, overall reactant used, enzyme-substrate complex formation, intermediate formation, decyclisation

Catalytic Residues Roles

Residue Roles
Thr11A (main-N) hydrogen bond donor, electrostatic stabiliser
Gly12A (main-N) hydrogen bond donor, electrostatic stabiliser
Asn13A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser14A (main-N) hydrogen bond donor, electrostatic stabiliser
Cys15A (main-N) hydrogen bond donor, electrostatic stabiliser
Arg16A (main-N) hydrogen bond donor, electrostatic stabiliser
Ser17A hydrogen bond donor, electrostatic stabiliser
Cys89A hydrogen bond acceptor
Cys82A nucleofuge

Chemical Components

ingold: intramolecular nucleophilic substitution, enzyme-substrate complex cleavage, intermediate collapse, intermediate terminated, overall product formed, native state of enzyme regenerated, cyclisation

Contributors

Gemma L. Holliday, Daniel E. Almonacid, Ellie Wright, James Torrance, Charity Hornby