PDBsum entry 9ef5 Go to PDB code:  Pore analysis for: 9ef5 calculated with MOLE 2.0 PDB id 9ef5 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 2.27 48.0 -0.77 -0.16 14.7 80 4 1 5 4 3 1 0   2 1.42 3.23 53.3 0.48 -0.13 3.1 85 1 1 4 7 4 0 2  NAG 2203 A 3 1.29 2.20 56.8 -0.57 -0.45 11.1 81 3 3 3 5 1 0 1   4 2.14 2.30 60.5 -1.46 -0.60 17.4 90 8 3 8 3 2 0 0   5 1.44 3.22 61.7 0.30 -0.01 6.7 85 3 1 3 9 4 0 2  NAG 2203 A 6 1.19 1.56 69.9 -1.38 -0.56 18.6 86 6 8 10 6 0 0 1   7 1.18 1.56 70.8 -1.26 -0.35 20.6 85 5 5 9 8 1 0 0   8 2.12 2.31 73.0 -1.75 -0.62 19.1 91 5 7 7 3 2 1 0   9 1.69 1.69 78.8 -0.61 -0.24 9.7 84 4 4 6 7 3 1 0   10 1.21 1.56 81.0 -2.10 -0.44 27.3 84 7 9 9 5 4 0 0   11 1.29 2.21 81.3 -1.25 -0.26 21.0 78 4 4 4 7 5 0 0   12 1.19 1.55 96.2 -1.38 -0.41 18.2 87 8 9 14 8 2 1 0   13 1.88 1.90 108.7 -2.27 -0.54 24.8 86 11 5 9 3 4 1 0   14 1.31 2.04 124.4 -0.41 -0.31 10.4 86 7 3 8 9 6 0 2  NAG 2203 A 15 1.45 1.53 137.5 -0.89 -0.41 14.6 88 10 8 15 10 5 0 2  NAG 2203 A 16 1.51 1.51 30.1 -0.94 -0.16 15.7 74 3 3 1 2 2 2 0   17 1.68 2.50 32.7 -0.44 0.01 15.4 74 4 5 1 7 3 1 0   18 1.59 3.34 33.8 -1.36 -0.13 19.6 71 3 5 0 2 3 3 0   19 1.52 1.52 34.6 -1.05 -0.12 19.4 74 5 5 2 5 2 1 0   20 1.57 3.27 38.3 -1.39 -0.12 22.2 72 5 7 1 5 3 2 0   21 1.69 1.73 50.7 -1.56 -0.26 19.8 73 5 5 4 8 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.