PDBsum entry 9ef5 Go to PDB code:  Tunnel analysis for: 9ef5 calculated with MOLE 2.0 PDB id 9ef5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 3.80 41.8 0.56 0.39 9.9 70 2 3 3 11 2 0 0   2 1.12 3.81 42.6 0.39 0.31 9.5 69 2 3 2 10 2 0 0   3 1.28 1.75 24.1 -0.68 0.02 10.1 76 3 2 1 5 2 1 1   4 1.29 1.76 26.8 -0.40 -0.10 7.4 82 2 1 1 5 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.