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PDBsum entry 6twh

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protein ligands metals Protein-protein interface(s) links
Viral protein PDB id
6twh

 

 

 

 

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Contents
Protein chains
(+ 0 more) 316 a.a.
(+ 0 more) 172 a.a.
Ligands
NAG-NAG ×2
NAG ×8
Metals
_CA ×3
Waters ×81
PDB id:
6twh
Name: Viral protein
Title: Crystal structure of the haemagglutinin mutant (gln226leu, gly228ser) from an h10n7 seal influenza virus isolated in germany
Structure: Hemagglutinin. Chain: a, c, e, l, n, p. Engineered: yes. Hemagglutinin ha2. Chain: b, d, f, m, o, q. Engineered: yes
Source: Influenza a virus (a/harbour seal/germany/1/2014(h10n7)). Organism_taxid: 1572188. Gene: ha. Expressed in: unidentified baculovirus. Expression_system_taxid: 10469. Expression_system_cell_line: sf9. Expression_system_cell_line: sf9
Resolution:
2.68Å     R-factor:   0.271     R-free:   0.302
Authors: J.Zhang,X.Xiong,A.Purkiss,P.Walker,S.Gamblin,J.J.Skehel
Key ref: S.Herfst et al. (2020). Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals. Cell Host Microbe, 28, 602. PubMed id: 33031770
Date:
13-Jan-20     Release date:   21-Oct-20    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
A0A0A7HR51  (A0A0A7HR51_9INFA) -  Hemagglutinin (Fragment) from Influenza A virus
Seq:
Struc:
 
Seq:
Struc:
547 a.a.
316 a.a.*
Protein chains
Pfam   ArchSchema ?
A0A0A7HR51  (A0A0A7HR51_9INFA) -  Hemagglutinin (Fragment) from Influenza A virus
Seq:
Struc:
 
Seq:
Struc:
547 a.a.
172 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 3 residue positions (black crosses)

 

 
Cell Host Microbe 28:602 (2020)
PubMed id: 33031770  
 
 
Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
S.Herfst, J.Zhang, M.Richard, R.McBride, P.Lexmond, T.M.Bestebroer, M.I.J.Spronken, D.de Meulder, J.M.van den Brand, M.E.Rosu, S.R.Martin, S.J.Gamblin, X.Xiong, W.Peng, R.Bodewes, E.van der Vries, A.D.M.E.Osterhaus, J.C.Paulson, J.J.Skehel, R.A.M.Fouchier.
 
  ABSTRACT  
 
In 2014, an outbreak of avian A/H10N7 influenza virus occurred among seals along North-European coastal waters, significantly impacting seal populations. Here, we examine the cross-species transmission and mammalian adaptation of this influenza A virus, revealing changes in the hemagglutinin surface protein that increase stability and receptor binding. The seal A/H10N7 virus was aerosol or respiratory droplet transmissible between ferrets. Compared with avian H10 hemagglutinin, seal H10 hemagglutinin showed stronger binding to the human-type sialic acid receptor, with preferential binding to α2,6-linked sialic acids on long extended branches. In X-ray structures, changes in the 220-loop of the receptor-binding pocket caused similar interactions with human receptor as seen for pandemic strains. Two substitutions made seal H10 hemagglutinin more stable than avian H10 hemagglutinin and similar to human hemagglutinin. Consequently, identification of avian-origin influenza viruses across mammals appears critical to detect influenza A viruses posing a major threat to humans and other mammals.
 

 

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