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PDBsum entry 6bpp
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Pore analysis for: 6bpp calculated with  MOLE 2.0
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PDB id
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6bpp
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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20 pores,
coloured by radius |
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14 pores,
coloured by radius
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14 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.05 |
3.28 |
43.6 |
-2.21 |
-0.40 |
19.1 |
88 |
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7 |
1 |
9 |
4 |
2 |
0 |
0 |
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KDO 3 C GMH 4 C GMH 5 C GLC 6 C GLC 7 C GLC 8 C
GMH 9 C KDO 10 C
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2 |
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1.05 |
1.05 |
45.9 |
1.61 |
0.40 |
7.3 |
83 |
0 |
2 |
1 |
13 |
1 |
0 |
0 |
FTT 602 A DAO 603 A FTT 613 B
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3 |
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1.17 |
1.17 |
47.1 |
-1.25 |
-0.23 |
14.1 |
84 |
6 |
2 |
6 |
5 |
2 |
1 |
0 |
PO4 616 B GCS 2 C KDO 3 C GMH 4 C GMH 5 C GLC 6 C
GLC 7 C GLC 8 C GMH 9 C KDO 10 C
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4 |
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2.45 |
2.99 |
50.4 |
-2.03 |
-0.40 |
16.7 |
91 |
7 |
1 |
11 |
4 |
2 |
0 |
0 |
KDO 3 C GMH 4 C GMH 5 C GLC 6 C GLC 7 C GLC 8 C
GMH 9 C KDO 10 C
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5 |
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1.15 |
1.33 |
59.0 |
-0.34 |
0.14 |
19.1 |
87 |
5 |
2 |
5 |
13 |
1 |
0 |
0 |
FTT 602 A DAO 603 A PO4 612 B FTT 613 B FTT 614 B
PO4 616 B PA1 1 C GCS 2 C KDO 3 C GMH 4 C GMH 5 C
GLC 6 C GLC 8 C KDO 10 C
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6 |
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1.16 |
1.31 |
59.9 |
0.02 |
0.24 |
17.4 |
84 |
5 |
3 |
2 |
13 |
1 |
0 |
0 |
FTT 602 A DAO 603 A FTT 604 A FTT 613 B FTT 614 B
MYR 615 B PO4 616 B PA1 1 C GCS 2 C KDO 3 C
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7 |
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2.60 |
3.12 |
60.6 |
-1.65 |
-0.29 |
12.6 |
95 |
3 |
1 |
11 |
4 |
2 |
0 |
0 |
KDO 3 C GMH 4 C GMH 5 C GLC 6 C GLC 7 C GLC 8 C
GMH 9 C KDO 10 C
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8 |
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1.98 |
1.97 |
63.8 |
-0.93 |
-0.24 |
14.3 |
87 |
7 |
1 |
6 |
8 |
1 |
0 |
0 |
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9 |
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1.98 |
1.97 |
65.4 |
-0.77 |
-0.26 |
10.9 |
91 |
4 |
2 |
10 |
10 |
1 |
0 |
0 |
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10 |
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1.17 |
1.32 |
66.6 |
1.19 |
0.46 |
10.3 |
83 |
4 |
3 |
1 |
20 |
1 |
0 |
0 |
FTT 602 A DAO 603 A FTT 604 A E1M 601 B FTT 613 B
FTT 614 B MYR 615 B PA1 1 C GCS 2 C
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11 |
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1.17 |
1.34 |
78.6 |
-0.57 |
0.10 |
17.1 |
84 |
6 |
3 |
7 |
15 |
3 |
0 |
0 |
FTT 602 A DAO 603 A PO4 612 B FTT 613 B FTT 614 B
PA1 1 C GCS 2 C KDO 3 C GMH 4 C GMH 5 C GLC 6 C
GLC 7 C GLC 8 C GMH 9 C KDO 10 C
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12 |
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1.62 |
1.65 |
102.2 |
-1.46 |
-0.38 |
24.1 |
81 |
6 |
10 |
4 |
5 |
2 |
0 |
0 |
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13 |
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1.80 |
1.75 |
122.0 |
-1.70 |
-0.58 |
17.1 |
90 |
8 |
7 |
14 |
7 |
1 |
0 |
0 |
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14 |
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1.24 |
1.24 |
152.9 |
-1.40 |
-0.43 |
18.1 |
87 |
11 |
10 |
14 |
9 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program