PDBsum entry 5wrn

Tunnel analysis for: 5wrn calculated with

MOLE 2.0

PDB id

5wrn

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

1.56

17.0

-1.21

-0.39

14.3

70

2

2

2

0

2

3

1

2

1.29

1.67

15.1

-1.05

-0.43

9.6

68

0

1

2

1

2

2

0

3

1.29

1.64

17.6

-1.58

-0.38

16.7

70

2

2

2

0

2

3

1

4

1.23

1.44

18.5

-0.67

-0.35

8.0

68

0

1

2

1

2

2

0

5

1.23

1.42

19.4

-0.99

-0.25

14.1

70

2

2

1

0

2

2

1

6

1.63

2.03

21.0

-2.17

-0.24

31.8

86

3

1

2

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.