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PDBsum entry 5onh
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5onh calculated with MOLE 2.0 PDB id
5onh
Pores calculated on whole structure Pores calculated excluding ligands
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24 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.73 2.73 28.6 -1.12 -0.74 10.8 86 2 0 1 0 0 0 0  C 23 E A 24 E C 25 E A 27 E G 28 E G 29 E G 30 E
A 31 E U 32 E A 37 E A 38 E U 39 E C 40 E C 41 E
C 42 E U 43 E C 44 E
2 4.61 4.61 29.0 -1.36 -0.78 15.7 78 1 3 0 0 0 0 0  G 28 B G 29 B A 27 E G 30 E A 31 E U 32 E A 37 E
A 38 E U 39 E C 40 E
3 3.37 3.42 30.4 -1.10 -0.80 12.9 77 2 2 0 0 0 0 0  U 33 B A 37 B U 8 E G 10 E U 11 E G 12 E G 46 E C
47 E G 49 E U 66 E C 67 E
4 2.58 2.59 33.8 -0.94 -0.83 8.5 80 0 0 0 0 0 0 0  C 2 E C 3 E C 4 E G 5 E G 6 E A 7 E G 46 E G 47 E
i:J U 47 E i:I U 48 E G 49 E C 50 E G 51 E G 52 E
A 58 E G 59 E U 60 E C 61 E C 62 E C 63 E G 64 E
C 65 E
5 2.47 2.47 34.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 3 E C 4 E G 5 E G 6 E A 7 E U 47 E i:I G 47 E i:
J U 48 E G 49 E C 50 E G 51 E G 52 E G 53 E U 55
E A 57 E A 58 E G 59 E U 60 E C 61 E C 62 E C 63
E G 64 E C 65 E
6 1.56 1.56 38.4 -1.09 -0.71 11.8 74 2 2 0 0 1 0 0  U 33 B A 37 B G 10 E U 11 E G 12 E G 46 E C 47 E
C 67 E C 68 E G 69 E G 70 E U 72 E
7 4.63 4.63 41.1 -0.98 -0.73 11.4 82 2 3 1 1 1 0 0  G 28 B G 29 B U 33 B A 37 B G 10 E A 26 E A 27 E
G 30 E A 31 E U 32 E A 37 E A 38 E U 39 E C 40 E
C 47 E
8 2.20 3.02 42.0 -1.06 -0.68 12.8 83 3 0 1 1 0 0 0  A 20 E i:A G 21 E A 22 E C 23 E C 42 E U 43 E C
44 E C 47 E i:F U 47 E i:I G 47 E i:J U 55 E A 57
E A 58 E G 59 E
9 5.09 5.10 46.0 -0.92 -0.60 15.4 88 2 3 1 2 0 0 0  A 27 B G 28 B U 33 B A 37 B G 10 E A 26 E A 27 E
A 37 E A 38 E G 46 E C 47 E
10 3.41 3.41 50.2 -1.53 -0.74 16.9 81 3 3 1 0 0 0 0  G 28 B G 29 B C 23 E A 24 E C 25 E A 26 E A 27 E
G 28 E G 29 E A 37 E A 38 E C 40 E C 41 E C 42 E
U 43 E C 44 E
11 3.53 3.53 53.0 -1.18 -0.79 12.7 81 3 3 2 1 1 0 0  G 28 B G 29 B A 37 B U 8 E G 10 E U 11 E G 12 E A
26 E A 27 E G 30 E A 31 E U 32 E A 37 E A 38 E U
39 E C 40 E G 49 E U 66 E C 67 E
12 2.20 3.02 53.4 -1.60 -0.59 22.0 73 6 1 0 2 0 0 0  U 16 E C 17 E U 20 E A 20 E i:A G 21 E A 22 E C
44 E C 47 E i:F U 47 E i:I G 47 E i:J U 55 E A 57
E A 58 E G 59 E
13 2.56 2.56 54.0 -0.63 -0.82 5.3 89 0 1 1 0 0 0 0  C 3 B C 4 B G 5 B G 6 B A 7 B U 47 B i:I G 47 B i:
J U 48 B G 49 B C 50 B G 52 B G 53 B U 55 B A 58
B U 60 B C 61 B C 62 B C 63 B G 64 B C 65 B
14 3.39 3.39 58.0 -1.56 -0.65 20.0 71 6 1 0 1 0 0 0  U 16 E C 17 E U 20 E G 21 E A 22 E C 23 E A 24 E
C 25 E A 27 E G 28 E G 29 E G 30 E A 31 E U 32 E
A 37 E A 38 E U 39 E C 40 E C 41 E C 42 E U 43 E
C 44 E
15 2.41 2.77 61.6 -1.76 -0.56 26.0 79 5 4 0 4 0 0 0  U 16 B C 17 B A 20 B i:A U 20 B G 21 B A 22 B C
44 B U 47 B i:I G 47 B i:J C 47 B i:F G 52 B G 53
B U 55 B A 58 B
16 2.50 2.66 70.2 -1.61 -0.49 18.3 83 6 7 5 3 2 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B G 49 B C 50 B C
67 B MG 101 B U 72 E
17 3.46 3.46 70.7 -0.99 -0.61 16.2 89 4 4 3 3 0 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B A 27 B G 28 B U
33 B A 37 B G 49 B C 50 B C 67 B MG 101 B G 10 E
A 26 E A 27 E G 46 E C 47 E
18 3.46 3.46 75.5 -1.10 -0.65 16.4 86 4 5 3 3 1 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B A 27 B G 28 B G
29 B A 37 B G 49 B C 50 B C 67 B MG 101 B A 27 E
G 30 E A 31 E U 32 E A 37 E A 38 E U 39 E C 40 E
19 2.48 2.92 83.4 -1.22 -0.47 16.2 83 5 7 4 5 3 0 0  A 27 B G 28 B G 29 B A 37 B A 27 E G 30 E A 31 E
U 32 E A 37 E A 38 E U 39 E C 40 E U 72 E
20 3.45 3.45 84.8 -1.32 -0.62 19.6 85 4 6 2 2 0 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B A 27 B G 28 B G
49 B C 50 B C 67 B MG 101 B A 37 E A 38 E
21 1.60 1.60 88.4 -0.93 -0.74 12.0 86 2 4 1 2 0 0 0  C 3 B C 4 B G 5 B G 6 B A 7 B U 8 B G 9 B G 10 B
A 14 B U 16 B C 17 B G 49 B C 50 B G 59 B C 61 B
C 62 B C 63 B G 64 B C 67 B C 68 B MG 101 B
22 2.48 2.63 92.7 -1.41 -0.40 18.6 82 5 8 3 4 2 0 0  A 27 B G 28 B A 37 E A 38 E U 72 E
23 2.44 2.77 98.9 -1.00 -0.71 12.3 84 4 2 1 3 1 0 0  A 20 B i:A G 21 B A 22 B C 23 B A 24 B C 25 B A
26 B A 27 B G 28 B G 29 B A 37 B U 39 B C 40 B C
41 B C 42 B U 43 B C 44 B G 45 B C 47 B i:F U 47
B i:I G 47 B i:J G 53 B U 55 B A 58 B A 27 E G 30
E A 31 E U 32 E A 37 E A 38 E U 39 E C 40 E
24 2.56 2.82 99.6 -1.07 -0.65 14.1 84 4 3 0 3 0 0 0  A 20 B i:A G 21 B A 22 B C 23 B A 24 B C 25 B A
26 B A 27 B G 28 B G 29 B A 37 B U 39 B C 40 B C
41 B C 42 B U 43 B C 44 B G 45 B U 47 B i:I G 47
B i:J C 47 B i:F G 52 B G 53 B U 55 B A 58 B A 37
E A 38 E
25 2.58 2.58 104.2 -1.19 -0.65 16.9 81 6 6 1 5 1 0 0  U 16 B C 17 B U 20 B G 21 B A 22 B C 23 B A 24 B
C 25 B A 26 B A 27 B G 28 B G 29 B A 37 B U 39 B
C 40 B C 41 B C 42 B U 43 B C 44 B G 45 B A 27 E
G 30 E A 31 E U 32 E A 37 E A 38 E U 39 E C 40 E
26 2.39 2.70 106.4 -1.01 -0.69 13.0 86 5 2 2 3 0 0 0  A 20 B i:A G 21 B A 22 B C 23 B A 24 B C 25 B A
26 B A 27 B G 28 B G 29 B A 37 B U 39 B C 40 B C
41 B C 42 B U 43 B C 44 B G 45 B U 47 B i:I G 47
B i:J C 47 B i:F G 52 B G 53 B U 55 B A 58 B U 8
E G 10 E U 11 E G 12 E A 26 E G 49 E U 66 E C 67 E
27 2.39 2.71 109.7 -1.28 -0.70 15.3 86 6 2 2 3 0 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B A 20 B i:A G 21
B A 22 B C 23 B A 24 B C 25 B A 26 B A 27 B A 38
B U 39 B C 40 B C 41 B C 42 B U 43 B C 44 B G 45
B U 47 B i:I G 47 B i:J C 47 B i:F G 49 B C 50 B
G 52 B G 53 B U 55 B A 58 B C 67 B MG 101 B
28 2.62 2.62 119.3 -1.34 -0.64 18.3 82 8 6 2 5 0 0 0  U 8 B G 9 B G 10 B U 11 B G 12 B U 16 B C 17 B U
20 B G 21 B A 22 B C 23 B A 24 B C 25 B A 26 B A
27 B A 38 B U 39 B C 40 B C 41 B C 42 B U 43 B C
44 B G 45 B G 49 B C 50 B C 67 B MG 101 B
29 2.63 2.63 122.4 -1.31 -0.60 19.7 80 6 7 0 5 0 0 0  U 16 B C 17 B U 20 B G 21 B A 22 B C 23 B A 24 B
C 25 B A 26 B A 27 B G 28 B G 29 B A 37 B U 39 B
C 40 B C 41 B C 42 B U 43 B C 44 B G 45 B A 37 E
A 38 E
30 2.50 2.93 132.3 -1.15 -0.48 14.9 83 7 6 3 6 2 0 0  A 20 B i:A G 21 B A 22 B C 23 B A 24 B C 25 B A
26 B A 27 B G 28 B G 29 B A 37 B U 39 B C 40 B C
41 B C 42 B U 43 B C 44 B G 45 B U 47 B i:I G 47
B i:J C 47 B i:F G 52 B G 53 B U 55 B A 58 B U 72
E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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