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PDBsum entry 5c0c

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Immune system PDB id
5c0c
Contents
Protein chains
276 a.a.
100 a.a.
200 a.a.
247 a.a.
Ligands
ARG-GLN-PHE-GLY-
PRO-ASP-TRP-ILE-
VAL-ALA
×2
EDO ×33
PG4 ×2
SO4 ×4
GOL ×3
Waters ×569

References listed in PDB file
Key reference
Title Hotspot autoimmune t cell receptor binding underlies pathogen and insulin peptide cross-Reactivity.
Authors D.K.Cole, A.M.Bulek, G.Dolton, A.J.Schauenberg, B.Szomolay, W.Rittase, A.Trimby, P.Jothikumar, A.Fuller, A.Skowera, J.Rossjohn, C.Zhu, J.J.Miles, M.Peakman, L.Wooldridge, P.J.Rizkallah, A.K.Sewell.
Ref. J Clin Invest, 2016, 126, 2191-2204. [DOI no: 10.1172/JCI85679]
PubMed id 27183389
Abstract
The cross-reactivity of T cells with pathogen- and self-derived peptides has been implicated as a pathway involved in the development of autoimmunity. However, the mechanisms that allow the clonal T cell antigen receptor (TCR) to functionally engage multiple peptide-major histocompatibility complexes (pMHC) are unclear. Here, we studied multiligand discrimination by a human, preproinsulin reactive, MHC class-I-restricted CD8+ T cell clone (1E6) that can recognize over 1 million different peptides. We generated high-resolution structures of the 1E6 TCR bound to 7 altered peptide ligands, including a pathogen-derived peptide that was an order of magnitude more potent than the natural self-peptide. Evaluation of these structures demonstrated that binding was stabilized through a conserved lock-and-key-like minimal binding footprint that enables 1E6 TCR to tolerate vast numbers of substitutions outside of this so-called hotspot. Highly potent antigens of the 1E6 TCR engaged with a strong antipathogen-like binding affinity; this engagement was governed though an energetic switch from an enthalpically to entropically driven interaction compared with the natural autoimmune ligand. Together, these data highlight how T cell cross-reactivity with pathogen-derived antigens might break self-tolerance to induce autoimmune disease.
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