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PDBsum entry 4b9b
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Tunnel analysis for: 4b9b calculated with  MOLE 2.0
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PDB id
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4b9b
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.45 |
1.49 |
51.4 |
-0.78 |
-0.34 |
7.5 |
83 |
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3 |
3 |
5 |
6 |
5 |
2 |
0 |
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PLP 500 B
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2 |
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1.44 |
1.47 |
53.5 |
-0.60 |
-0.27 |
6.2 |
82 |
2 |
2 |
5 |
5 |
5 |
3 |
0 |
PLP 500 A
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3 |
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1.20 |
1.44 |
16.0 |
-0.44 |
-0.38 |
11.8 |
85 |
1 |
1 |
3 |
3 |
1 |
0 |
0 |
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4 |
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1.20 |
1.21 |
19.9 |
-0.68 |
-0.45 |
12.5 |
88 |
1 |
2 |
3 |
3 |
0 |
0 |
0 |
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5 |
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1.22 |
1.24 |
16.6 |
-0.67 |
-0.49 |
11.6 |
85 |
1 |
1 |
3 |
3 |
1 |
0 |
0 |
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6 |
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1.33 |
1.61 |
16.6 |
-2.21 |
-0.41 |
26.2 |
75 |
1 |
3 |
1 |
0 |
1 |
1 |
0 |
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7 |
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1.34 |
1.61 |
17.1 |
-2.14 |
-0.37 |
25.1 |
75 |
1 |
3 |
1 |
0 |
1 |
1 |
0 |
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8 |
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1.16 |
1.17 |
19.8 |
-0.44 |
-0.39 |
10.8 |
84 |
1 |
2 |
3 |
3 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program