PDBsum entry 3sfd

Pore analysis for: 3sfd calculated with

MOLE 2.0

PDB id

3sfd

Pores calculated on whole structure

Pores calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 pore, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.80

2.07

30.1

-1.53

0.25

20.7

72

6

0

1

3

5

1

0

HEM 1305 C PCI 1 D

2

1.86

2.06

30.9

-2.39

-0.25

22.7

79

8

1

3

0

3

1

0

HEM 1305 C

3

1.24

1.24

33.2

-1.52

0.07

24.4

76

7

1

0

4

4

1

0

HEM 1305 C PCI 1 D

4

1.23

1.46

34.6

-1.33

-0.22

21.6

82

7

1

1

4

1

0

0

HEM 1305 C

5

1.23

1.24

35.5

-1.95

-0.20

18.9

76

6

2

2

1

3

1

0

6

1.75

1.85

37.8

-0.73

0.03

17.1

80

6

0

3

6

3

1

0

HEM 1305 C PCI 1 D

7

2.03

2.31

42.8

-0.01

0.40

17.9

77

6

0

2

10

4

1

0

HEM 1305 C PCI 1 D

8

1.26

1.24

54.6

-0.31

0.20

19.5

79

8

1

2

10

2

0

0

HEM 1305 C

9

1.18

1.34

62.5

0.91

0.08

6.0

79

3

0

3

12

2

0

0

HEM 1305 C

10

1.21

1.43

126.4

-0.90

-0.14

19.3

82

13

8

5

14

6

0

0

FAD 700 A

11

1.13

1.54

130.4

-0.81

-0.17

17.7

83

12

8

6

13

5

2

0

FAD 700 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.