PDBsum entry 3sfd Go to PDB code:  Tunnel analysis for: 3sfd calculated with MOLE 2.0 PDB id 3sfd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 3.05 51.5 0.15 0.29 13.9 77 6 2 2 8 5 0 0   2 1.15 1.24 60.5 -0.27 0.09 13.6 76 6 3 4 7 5 2 0   3 1.32 1.48 31.7 -1.72 -0.19 16.2 72 4 3 2 0 4 0 1   4 1.32 1.48 32.3 -1.62 -0.12 15.4 73 4 3 2 1 4 0 0   5 1.32 1.46 32.5 -1.83 -0.23 19.7 79 5 3 2 0 3 0 0   6 1.32 1.46 32.7 -1.89 -0.30 19.2 70 5 2 2 0 4 0 1   7 1.30 1.45 33.2 -1.74 -0.22 17.5 71 5 2 2 1 4 0 0   8 1.30 1.44 33.5 -1.89 -0.34 21.0 77 6 2 2 0 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.