spacer
spacer

PDBsum entry 3e2e

Go to PDB code: 
Top Page protein dna_rna tunnels links
Tunnel analysis for: 3e2e calculated with MOLE 2.0 PDB id
3e2e
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.22 51.9 -0.69 -0.27 16.4 80 6 5 4 6 1 2 2  U 6 R G 7 R
2 1.22 1.22 15.8 -1.14 -0.53 16.8 79 3 0 0 1 0 0 0  
3 1.60 1.77 15.1 -1.25 -0.42 17.9 72 2 2 0 2 1 1 0  DT 104 N DA 105 N

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer