 |
PDBsum entry 1nkt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1nkt calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1nkt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.46 |
1.46 |
17.2 |
-0.37 |
-0.23 |
10.2 |
75 |
|
2 |
0 |
0 |
4 |
3 |
1 |
0 |
|
|
 |
|
2 |
 |
1.37 |
1.38 |
29.9 |
-2.25 |
-0.58 |
19.5 |
80 |
3 |
5 |
3 |
1 |
3 |
0 |
0 |
|
|
3 |
 |
1.36 |
1.36 |
31.5 |
-0.97 |
-0.22 |
6.5 |
83 |
0 |
1 |
3 |
3 |
3 |
0 |
0 |
|
|
4 |
 |
1.40 |
2.64 |
16.4 |
0.37 |
-0.01 |
15.3 |
83 |
1 |
3 |
0 |
5 |
0 |
0 |
0 |
|
|
5 |
 |
1.34 |
1.86 |
16.3 |
0.02 |
0.28 |
16.4 |
74 |
2 |
3 |
1 |
4 |
1 |
0 |
0 |
|
|
6 |
 |
1.34 |
1.80 |
17.1 |
-0.01 |
0.19 |
16.9 |
75 |
1 |
2 |
1 |
5 |
2 |
0 |
0 |
|
|
7 |
 |
1.07 |
1.07 |
18.5 |
-0.84 |
-0.26 |
18.3 |
86 |
2 |
2 |
2 |
2 |
1 |
0 |
0 |
|
 |
8 |
 |
2.41 |
2.66 |
15.7 |
-0.78 |
-0.06 |
20.7 |
85 |
2 |
1 |
1 |
3 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program