PDBsum entry 1ded Go to PDB code:  Pore analysis for: 1ded calculated with MOLE 2.0 PDB id 1ded Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.52 32.7 -1.08 -0.39 9.1 88 2 2 3 3 1 1 0   2 3.38 3.38 35.0 -0.84 -0.38 7.1 90 0 2 5 3 1 2 0   3 1.30 1.52 44.1 -0.24 -0.25 7.0 91 2 2 5 5 2 0 0   4 3.38 3.38 49.6 -0.75 -0.32 13.2 99 1 4 7 6 0 0 0   5 3.67 4.26 49.7 -1.26 -0.39 14.7 93 1 6 7 4 0 2 0   6 1.30 1.53 50.3 -0.69 -0.28 12.7 94 4 5 8 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.