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PDBsum entry 1ded
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Tunnel analysis for: 1ded calculated with  MOLE 2.0
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PDB id
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1ded
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.27 |
3.06 |
39.8 |
-1.20 |
-0.36 |
21.7 |
90 |
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3 |
5 |
4 |
3 |
1 |
0 |
0 |
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2 |
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1.27 |
2.78 |
42.3 |
-1.10 |
-0.37 |
20.1 |
92 |
4 |
5 |
7 |
4 |
1 |
0 |
0 |
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3 |
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1.20 |
1.89 |
19.0 |
-1.52 |
0.40 |
16.6 |
73 |
3 |
2 |
2 |
3 |
4 |
0 |
0 |
GLC 2 C AC1 3 C
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4 |
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1.21 |
2.12 |
19.0 |
-1.61 |
0.04 |
21.2 |
78 |
1 |
3 |
2 |
3 |
2 |
0 |
0 |
BGC 1 C GLC 2 C AC1 3 C
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5 |
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1.22 |
2.59 |
20.0 |
-1.60 |
0.38 |
17.8 |
75 |
3 |
2 |
2 |
4 |
4 |
0 |
0 |
GLC 2 C AC1 3 C
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6 |
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1.21 |
2.59 |
20.0 |
-1.60 |
0.05 |
21.8 |
80 |
1 |
3 |
2 |
4 |
2 |
0 |
0 |
BGC 1 C GLC 2 C AC1 3 C
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7 |
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1.18 |
2.22 |
25.4 |
-0.86 |
-0.07 |
15.4 |
79 |
2 |
3 |
2 |
3 |
3 |
0 |
0 |
BGC 1 C GLC 2 C AC1 3 C
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8 |
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1.16 |
2.29 |
26.4 |
-0.93 |
-0.06 |
16.1 |
80 |
2 |
3 |
2 |
4 |
3 |
0 |
0 |
BGC 1 C GLC 2 C AC1 3 C
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9 |
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1.36 |
3.04 |
18.5 |
-2.49 |
-0.29 |
21.4 |
81 |
3 |
1 |
4 |
0 |
3 |
1 |
0 |
CA 5003 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program