PDBsum entry 1cli Go to PDB code:  Tunnel analysis for: 1cli calculated with MOLE 2.0 PDB id 1cli Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.17 29.5 -1.09 -0.39 13.8 92 4 2 5 3 1 4 0   2 1.03 1.29 39.7 -0.92 -0.43 10.7 95 4 3 5 7 0 7 0  SO4 3350 D 3 1.16 1.17 43.6 -0.86 -0.36 10.7 98 3 3 6 6 0 6 0  SO4 3350 D 4 1.12 1.61 98.4 0.27 -0.13 6.9 91 4 8 6 30 2 14 0  SO4 3350 D 5 0.95 1.47 31.4 0.04 -0.09 12.0 86 1 4 2 11 1 4 0   6 0.98 1.43 39.6 0.12 -0.20 7.1 88 2 4 3 14 1 4 0  SO4 1350 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.