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Ligand clusters for UniProt code Q9ALJ4

Ligand clusters for Q9ALJ4: Alpha-galactosidase AgaA from Geobacillus stearothermophilus

6 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4fnpA  
JSmol
 

Structures

PDB   Schematic diagram
4fnpA    
4fnuA    
4fntA    
4fnsA    

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: FRU-GLC-GLA × 1
FRU=Beta-D-Fructofuranose, GLC=Alpha-D-Glucopyranose, GLA=Alpha-D-Galactopyranose.
PDB code: 4fnt(A).


 
2. Ligand: GLA-GLA-GLC-FRU × 1
GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose.
PDB code: 4fnu(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: DGJ × 1
migalastat
(2r,3s,4r,5s)-2-(Hydroxymethyl)piperidine-3,4,5-Triol
PDB code: 4fns(A).


 
2. Ligand: GLA-GLA-GLC-FRU × 1
GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose.
PDB code: 4fnu(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 4fnp(A), 4fns(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 4fnp(A), 4fns(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 4fnp(A), 4fns(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4fnp(A).

 

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