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PDBsum
Ligand clusters for UniProt code Q9ALJ4
Ligand clusters for Q9ALJ4: Alpha-galactosidase AgaA from Geobacillus stearothermophilus
6 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4fnpA
Structures
PDB
Schematic diagram
4fnp
A
4fnu
A
4fnt
A
4fns
A
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
FRU-GLC-GLA × 1
FRU
=Beta-D-Fructofuranose,
GLC
=Alpha-D-Glucopyranose,
GLA
=Alpha-D-Galactopyranose.
PDB code:
4fnt
(A).
2. Ligand:
GLA-GLA-GLC-FRU × 1
GLA
=Alpha-D-Galactopyranose,
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
4fnu
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
DGJ × 1
migalastat
(2r,3s,4r,5s)-2-(Hydroxymethyl)piperidine-3,4,5-Triol
PDB code:
4fns
(A).
2. Ligand:
GLA-GLA-GLC-FRU × 1
GLA
=Alpha-D-Galactopyranose,
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
4fnu
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4fnp
(A),
4fns
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4fnp
(A),
4fns
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
4fnp
(A),
4fns
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4fnp
(A).