Ligand clusters for UniProt code Q99497

Ligand clusters for Q99497: Parkinson disease protein 7 from Homo sapiens

		Top 6 (of 25) ligand clusters Cluster 1. 23 ligand types 53 ligands Cluster 2. 6 ligand types 8 ligands Cluster 3. 1 ligand type 3 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 3b38A

Structures

PDB		Schematic diagram
3b38A
4zggA
4s0zA
3bweA
5sy9A
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Cluster 1 contains 23 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Zn		1. Metal: _ZN × 2 PDB codes: 4p35(A), 4p36(A).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 6afb(A).
		3. Ligand: EDO × 16 1,2-Ethanediol PDB codes: 3b36(A), 3b38(A), 3b3a(A), 4mtc(A), 4n0m(A), 4n12(A), 4zgg(A), 5sy9(A), 5sya(A),
_Cl		4. Metal: _CL × 13 PDB codes: 4p35(A), 6af5(A), 6af9(A), 6afa(A), 6afc(A), 6afd(A), 6afe(A), 6aff(A), 6afh(A), 6afi(A), 6afj(A), 6afl(A), 6e5z(A).
		5. Ligand: ISN × 2 Isatin PDB codes: 6af9(A), 6afa(A).
_Cu		6. Metal: _CU × 2 PDB codes: 4mnt(A), 4n0m(A).
		7. Ligand: 72R × 1 5-Fluoranyl-1~{h}-Indole-2,3-Dione PDB code: 6afc(A).
		8. Ligand: 72S × 1 7-Methyl-1~{h}-Indole-2,3-Dione PDB code: 6afd(A).
		9. Ligand: 72T × 1 7-(Trifluoromethyl)-1~{h}-Indole-2,3-Dione PDB code: 6afe(A).
		10. Ligand: 72U × 1 Methyl 2,3-Bis(oxidanylidene)-1~{h}-Indole-7- Carboxylate PDB code: 6aff(A).
		11. Ligand: 72V × 1 1-Methylindole-2,3-Dione PDB code: 6afg(A).
		12. Ligand: 73D × 1 1-Ethylindole-2,3-Dione PDB code: 6afi(A).
		13. Ligand: 73F × 1 1-(2-Phenylethyl)indole-2,3-Dione PDB code: 6afh(A).
		14. Ligand: 73G × 1 Butyl 2-[2,3-Bis(oxidanylidene)indol-1-Yl]ethanoate PDB code: 6afj(A).
		15. Ligand: 73H × 1 5-Fluoranyl-1-(2-Phenylethyl)indole-2,3-Dione PDB code: 6afl(A).
		16. Ligand: ACT × 1 Acetate ion PDB code: 4s0z(A).
		17. Ligand: DTT × 1 2,3-Dihydroxy-1,4-Dithiobutane PDB code: 5sy6(A).
		18. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 6m8z(A).
		19. Ligand: P15 × 1 2,5,8,11,14,17-Hexaoxanonadecan-19-Ol PDB code: 4p36(A).
		20. Ligand: P4C × 1 O-Acetaldehydyl-Hexaethylene glycol PDB code: 3cz9(A).
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Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: ISN × 3 Isatin PDB codes: 6af5(A), 6af9(A), 6afb(A).
		2. Ligand: 72S × 1 7-Methyl-1~{h}-Indole-2,3-Dione PDB code: 6afd(A).
		3. Ligand: 72T × 1 7-(Trifluoromethyl)-1~{h}-Indole-2,3-Dione PDB code: 6afe(A).
		4. Ligand: 72U × 1 Methyl 2,3-Bis(oxidanylidene)-1~{h}-Indole-7- Carboxylate PDB code: 6aff(A).
		5. Ligand: 72V × 1 1-Methylindole-2,3-Dione PDB code: 6afg(A).
		6. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5sy9(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1PE × 3 Pentaethylene glycol PDB codes: 4p2g(A), 4p34(A), 6af7(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 3b36(A), 4s0z(A), 4zgg(A).
		2. Ligand: ISN × 2 Isatin PDB codes: 6af9(A), 6afb(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: MLA × 1 Malonic acid PDB code: 3cza(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4p35(A).