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Ligand clusters for UniProt code Q96EB6

Ligand clusters for Q96EB6: NAD-dependent protein deacetylase sirtuin-1 from Homo sapiens

6 ligand clusters
Cluster 1.
9 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
9 ligands
Representative protein: 5btrA  
JSmol
 

Structures

PDB   Schematic diagram
5btrA    
4zzhA    
4ig9A    
4kxqA    
4if6A    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 4kxq(A), 4zzj(A).


 
2. Ligand: STL × 6
Resveratrol
PDB codes: 5btr(A),


 
3. Ligand: ACE-ARG-HIS-LYS-FDL × 2
ACE=Acetyl group, FDL=N~6~-Acetyl-N-(4-Methyl-2-Oxo-2h-Chromen-7-Yl)-L- Lysinamide.
PDB codes: 5btr(A),


 
4. Ligand: APR × 2
Adenosine-5-Diphosphoribose
PDB codes: 4if6(A), 4kxq(A).


 
5. Ligand: 1NS × 1
4-(4-{2-[(Methylsulfonyl)amino]ethyl}piperidin-1-Yl) thieno[3,2-D]pyrimidine-6-Carboxamide
PDB code: 4zzi(A).


 
6. Ligand: 4I5 × 1
(6s)-2-Chloro-5,6,7,8,9,10- Hexahydrocyclohepta[b]indole-6-Carboxamide
PDB code: 4i5i(A).


 
7. Ligand: ARG-HIS-LYS-ALY-LEU-NLE-PHE × 1
ALY=N(6)-Acetyllysine, NLE=Norleucine.
PDB code: 4zzj(A).


 
8. Ligand: CNA × 1
Carba-Nicotinamide-Adenine-Dinucleotide
PDB code: 4zzj(A).


 
9. Ligand: NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code: 4i5i(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: 4TQ × 2
(3s)-1,3-Dimethyl-N-[3-(1,3-Oxazol-5-Yl)phenyl]-6-[3- (Trifluoromethyl)phenyl]-2,3-
Dihydropyrido[2,3- B]pyrazine-4(1h)-Carboxamide
PDB codes: 4zzi(A), 4zzj(A).


 
2. Ligand: 4TO × 1
(4s)-N-[3-(1,3-Oxazol-5-Yl)phenyl]-7-[3- (Trifluoromethyl)phenyl]-3,4-Dihydro-1,4-
Methanopyrido[2,3-B][1,4]diazepine-5(2h)-Carboxamide
PDB code: 4zzh(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACE-ARG-HIS-LYS-FDL × 2
ACE=Acetyl group, FDL=N~6~-Acetyl-N-(4-Methyl-2-Oxo-2h-Chromen-7-Yl)-L- Lysinamide.
PDB codes: 5btr(A),

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4zzj(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: BME × 1
Beta-Mercaptoethanol
PDB code: 4kxq(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 9
PDB codes: 4i5i(A), 4if6(A), 4ig9(A), 4kxq(A), 4zzh(A), 4zzi(A), 4zzj(A), 5btr(A),

 

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