Ligand clusters for UniProt code Q8ZIE7

Ligand clusters for Q8ZIE7: D-alanine--D-alanine ligase from Yersinia pestis

		Top 6 (of 9) ligand clusters Cluster 1. 4 ligand types 5 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 2 ligand types 7 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5bpfC

Structures

PDB		Schematic diagram
5bpfC
5c1pC
5bphA
3v4zA
5c1pA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 5c1o(A).
		2. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 5bpf(C), 5c1p(C).
		3. Ligand: AMP × 1 Adenosine monophosphate PDB code: 5bph(A).
		4. Ligand: ANP × 1 Phosphoaminophosphonic acid-Adenylate ester PDB code: 5c1o(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5bpf(A).
		2. Ligand: ACT × 3 Acetate ion PDB codes: 5bpf(C), 5bph(A), 5c1p(C).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 5bpf(A), 5bph(A), 5c1p(A),
		2. Ligand: ACT × 1 Acetate ion PDB code: 5bpf(C).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3v4z(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5bph(A), 5c1p(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5c1p(A).