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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q8X1D8
Ligand clusters for Q8X1D8: Nitroalkane oxidase from Fusarium oxysporum
Top 6 (of 9) ligand clusters
Cluster 1.
6 ligand types
13 ligands
Cluster 2.
3 ligand types
9 ligands
Cluster 3.
3 ligand types
9 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3d9dA
Structures
PDB
Schematic diagram
3d9d
A
2reh
A
3d9f
A
2zaf
A
2c12
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
FAD × 7
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
2c12
(A),
2reh
(A),
2zaf
(A),
3d9d
(A),
3d9e
(A),
3d9f
(A),
3fcj
(A).
2. Ligand:
N6C × 2
1-Nitrohexane
PDB codes:
3d9d
(A),
3d9f
(A).
3. Ligand:
FAD-CNX × 1
FAD
=Flavin-Adenine dinucleotide,
CNX
=Heptanenitrile.
PDB code:
3d9g
(A).
4. Ligand:
FAD-NBT × 1
FAD
=Flavin-Adenine dinucleotide,
NBT
=(2s)-2-Nitrobutane.
PDB code:
2c0u
(A).
5. Ligand:
N8C × 1
1-Nitrooctane
PDB code:
3d9e
(A).
6. Ligand:
NIE × 1
Nitroethane
PDB code:
3fcj
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
FAD × 7
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
2c12
(A),
2reh
(A),
2zaf
(A),
3d9d
(A),
3d9e
(A),
3d9f
(A),
3fcj
(A).
2. Ligand:
FAD-CNX × 1
FAD
=Flavin-Adenine dinucleotide,
CNX
=Heptanenitrile.
PDB code:
3d9g
(A).
3. Ligand:
FAD-NBT × 1
FAD
=Flavin-Adenine dinucleotide,
NBT
=(2s)-2-Nitrobutane.
PDB code:
2c0u
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
FAD × 7
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
2c12
(A),
2reh
(A),
2zaf
(A),
3d9d
(A),
3d9e
(A),
3d9f
(A),
3fcj
(A).
2. Ligand:
FAD-CNX × 1
FAD
=Flavin-Adenine dinucleotide,
CNX
=Heptanenitrile.
PDB code:
3d9g
(A).
3. Ligand:
FAD-NBT × 1
FAD
=Flavin-Adenine dinucleotide,
NBT
=(2s)-2-Nitrobutane.
PDB code:
2c0u
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2c12
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2c12
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2c12
(A).