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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q8GSD2

Ligand clusters for Q8GSD2: Lectin (Fragment) from Pterocarpus angolensis

4 ligand clusters
Cluster 1.
11 ligand types
27 ligands
 Cluster 2.
1 ligand type
4 ligands
 Cluster 3.
2 ligand types
23 ligands
 Cluster 4.
2 ligand types
2 ligands
Representative protein: 1n3oA  
JSmol
 

Structures

PDB   Schematic diagram
1n3oA    
2gntA    
1q8oA    
1q8qA    
2phtA    
 more ...

 

 Cluster 1 contains 11 ligand types

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Ligand Description


 
1. Ligand: MAN-MAN × 8
MAN=Alpha-D-Mannopyranose.
PDB codes: 1q8v(A), 2arx(A), 2gmm(A), 2phf(A), 2phr(A), 2phu(A), 2phw(A), 2phx(A).


 
2. Ligand: MMA-MAN × 6
MMA=Methyl alpha-D-Mannopyranoside, MAN=Alpha-D-Mannopyranose.
PDB codes: 1q8o(A), 1q8p(A), 1q8q(A), 1q8s(A), 1s1a(A), 2gnd(A).


 
3. Ligand: MAN × 3
Alpha-D-Mannopyranose
PDB codes: 2are(A), 2gn3(A), 2gnm(A).


 
4. Ligand: MAN-NAG × 3
MAN=Alpha-D-Mannopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 2ar6(A), 2arb(A), 2gmp(A).


 
5. Ligand: FRU-GLC × 1
FRU=Beta-D-Fructofuranose, GLC=Alpha-D-Glucopyranose.
PDB code: 1n3q(A).


 
6. Ligand: GLC-FRU × 1
GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose.
PDB code: 1n3p(A).


 
7. Ligand: GYP × 1
Methyl alpha-D-Glucopyranoside
PDB code: 1n3o(A).


 
8. Ligand: MAN-BMA-MAN × 1
MAN=Alpha-D-Mannopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 2gn7(A).


 
9. Ligand: MAN-MAN-MAN × 1
MAN=Alpha-D-Mannopyranose.
PDB code: 2pht(A).


 
10. Ligand: MMA × 1
Methyl alpha-D-Mannopyranoside
PDB code: 1ukg(A).


 
11. Ligand: MMA-MAN-NAG × 1
MMA=Methyl alpha-D-Mannopyranoside, MAN=Alpha-D-Mannopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 2auy(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 4
Sulfate ion
PDB codes: 2gme(A), 2gmm(A), 2gmp(A), 2gn3(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 22
PDB codes: 1n3o(A), 1n3p(A), 1n3q(A), 1q8o(A), 1q8p(A), 1q8q(A), 1q8s(A), 1q8v(A), 1s1a(A), 1ukg(A), 2ar6(A), 2arb(A), 2are(A), 2arx(A), 2auy(A), 2gnd(A), 2phf(A), 2phr(A), 2pht(A), 2phu(A), 2phw(A), 2phx(A).

_Ca
 
2. Metal: _CA × 1
PDB code: 2gnt(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 1
PDB code: 2gnm(A).

_Ca
 
2. Metal: _CA × 1
PDB code: 2gnt(A).

 

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